Analysing biological pathways in genome-wide association studies

K Wang, M Li, H Hakonarson - Nature Reviews Genetics, 2010 - nature.com
Genome-wide association (GWA) studies have typically focused on the analysis of single
markers, which often lacks the power to uncover the relatively small effect sizes conferred by …

[HTML][HTML] Genetic mapping of quantitative trait loci in crops

Y Xu, P Li, Z Yang, C Xu - The Crop Journal, 2017 - Elsevier
Dissecting the genetic architecture of complex traits is an ongoing challenge for geneticists.
Two complementary approaches for genetic mapping, linkage mapping and association …

Rare-variant association testing for sequencing data with the sequence kernel association test

MC Wu, S Lee, T Cai, Y Li, M Boehnke, X Lin - The American Journal of …, 2011 - cell.com
Sequencing studies are increasingly being conducted to identify rare variants associated
with complex traits. The limited power of classical single-marker association analysis for rare …

Testing in microbiome-profiling studies with MiRKAT, the microbiome regression-based kernel association test

N Zhao, J Chen, IM Carroll, T Ringel-Kulka… - The American Journal of …, 2015 - cell.com
High-throughput sequencing technology has enabled population-based studies of the role
of the human microbiome in disease etiology and exposure response. Distance-based …

Powerful SNP-set analysis for case-control genome-wide association studies

MC Wu, P Kraft, MP Epstein, DM Taylor… - The American Journal of …, 2010 - cell.com
GWAS have emerged as popular tools for identifying genetic variants that are associated
with disease risk. Standard analysis of a case-control GWAS involves assessing the …

Statistical analysis strategies for association studies involving rare variants

V Bansal, O Libiger, A Torkamani… - Nature Reviews Genetics, 2010 - nature.com
The limitations of genome-wide association (GWA) studies that focus on the phenotypic
influence of common genetic variants have motivated human geneticists to consider the …

Sequence kernel association test for quantitative traits in family samples

H Chen, JB Meigs, J Dupuis - Genetic epidemiology, 2013 - Wiley Online Library
A large number of rare genetic variants have been discovered with the development in
sequencing technology and the lowering of sequencing costs. Rare variant analysis may …

Comparison of statistical tests for disease association with rare variants

S Basu, W Pan - Genetic epidemiology, 2011 - Wiley Online Library
In anticipation of the availability of next‐generation sequencing data, there is increasing
interest in investigating association between complex traits and rare variants (RVs). In …

Kernel-based whole-genome prediction of complex traits: a review

G Morota, D Gianola - Frontiers in genetics, 2014 - frontiersin.org
Prediction of genetic values has been a focus of applied quantitative genetics since the
beginning of the 20th century, with renewed interest following the advent of the era of whole …

Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach

M Vounou, TE Nichols, G Montana… - Neuroimage, 2010 - Elsevier
There is growing interest in performing genome-wide searches for associations between
genetic variants and brain imaging phenotypes. While much work has focused on single …