A genomic overview of the population structure of Salmonella

NF Alikhan, Z Zhou, MJ Sergeant, M Achtman - PLoS genetics, 2018 - journals.plos.org
For many decades, Salmonella enterica has been subdivided by serological properties into
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …

Microbial contamination of fresh produce: what, where, and how?

B Machado‐Moreira, K Richards… - … reviews in food …, 2019 - Wiley Online Library
Promotion of healthier lifestyles has led to an increase in consumption of fresh produce.
Such foodstuffs may expose consumers to increased risk of foodborne disease, as often they …

[HTML][HTML] Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks

S Li, Y He, DA Mann, X Deng - Nature communications, 2021 - nature.com
A pandemic of Salmonella enterica serotype Enteritidis emerged in the 1980s due to
contaminated poultry products. How Salmonella Enteritidis rapidly swept through continents …

[HTML][HTML] The European Union summary report on trends and sources of zoonoses, zoonotic agents and food‐borne outbreaks in 2017

EFS Authority - EFSa Journal, 2018 - ncbi.nlm.nih.gov
This report of the European Food Safety Authority and the European Centre for Disease
Prevention and Control presents the results of zoonoses monitoring activities carried out in …

[HTML][HTML] The European Union summary report on trends and sources of zoonoses, zoonotic agents and food‐borne outbreaks in 2016

EFS Authority - EFSA journal, 2017 - ncbi.nlm.nih.gov
This report of the European Food Safety Authority and the European Centre for Disease
Prevention and Control presents the results of the zoonoses monitoring activities carried out …

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data

S Zhang, HC Den Bakker, S Li, J Chen… - Applied and …, 2019 - Am Soc Microbiol
SeqSero, launched in 2015, is a software tool for Salmonella serotype determination from
whole-genome sequencing (WGS) data. Despite its routine use in public health and food …

The European Union summary report on trends and sources of zoonoses, zoonotic agents and food‐borne outbreaks in 2017

European Food Safety Authority and European … - EFSa …, 2018 - Wiley Online Library
This report of the European Food Safety Authority and the European Centre for Disease
Prevention and Control presents the results of zoonoses monitoring activities carried out in …

The European Union summary report on trends and sources of zoonoses, zoonotic agents and food‐borne outbreaks in 2016

European Food Safety Authority… - EFSA …, 2017 - Wiley Online Library
This report of the European Food Safety Authority and the European Centre for Disease
Prevention and Control presents the results of the zoonoses monitoring activities carried out …

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

T Dallman, P Ashton, U Schafer, A Jironkin… - …, 2018 - academic.oup.com
Real-time surveillance of infectious disease using whole genome sequencing data poses
challenges in both result generation and communication. SnapperDB represents a set of …

Typing methods based on whole genome sequencing data

L Uelze, J Grützke, M Borowiak, JA Hammerl… - One Health …, 2020 - Springer
Whole genome sequencing (WGS) of foodborne pathogens has become an effective
method for investigating the information contained in the genome sequence of bacterial …