[HTML][HTML] A simple MATLAB toolbox for analyzing calcium imaging data in vitro and in vivo

NS Desai, C Zhong, R Kim, DA Talmage… - Journal of Neuroscience …, 2024 - Elsevier
Background Fluorescence imaging of calcium dynamics in neuronal populations is powerful
because it offers a way of relating the activity of individual cells to the broader population of …

Region of interest determination algorithm of lensless calcium imaging datasets

VCG Castillo, L Akbar, R Siwadamrongpong, Y Ohta… - Plos one, 2024 - journals.plos.org
Advances in fluorescence imaging technology have been crucial to the progress of
neuroscience. Whether it was specific expression of indicator proteins, detection of …

[HTML][HTML] Visuomotor experience induces functional and structural plasticity of chandelier cells

K Seignette, N Jamann, P Papale, H Terra… - eLife, 2023 - elifesciences.org
Detailed characterization of interneuron subtypes in primary visual cortex (V1) has greatly
contributed to understanding visual perception, yet the role of chandelier cells (ChCs) in …

[HTML][HTML] Experience shapes chandelier cell function and structure in the visual cortex

K Seignette, N Jamann, P Papale, H Terra… - Elife, 2024 - elifesciences.org
Detailed characterization of interneuron types in primary visual cortex (V1) has greatly
contributed to understanding visual perception, yet the role of chandelier cells (ChCs) in …

Fast Neuronal Segmentation of Two-Photon Functional Imaging Recordings Using CITE-On

M Brondi, L Sità, S Curreli, T Fellin - Identification, Characterization, and …, 2024 - Springer
Two-photon imaging is a powerful method to record the activity of neuronal ensembles in the
intact animal brain. Here, we describe a protocol to run a recent analytical approach, CITE …

Experience-dependent predictions of feedforward and contextual information in mouse visual cortex

K Seignette, L de Kraker, P Papale, LS Petro, B Hobo… - bioRxiv, 2024 - biorxiv.org
Neurons in primary visual cortex are driven by feedforward visual inputs and top-down
contextual inputs. The nature of this contextual information is difficult to study, as responses …

On Optimizing Miniscope Data Analysis with Simulated Data: A Study of Parameter Optimization in the Minian Analysis Pipeline

AI Erofeev, MV Petrushan, LV Lysenko… - Neuroscience and …, 2024 - Springer
In vivo calcium imaging is widely used in neuroscience to assess the activity of neuronal
ensembles. The advent of the single-photon miniature fluorescence microscope (miniscope) …

Visual Analytics and Exploration of Calcium Transient Imaging Data using Event-Based Clustering

S Fang, M Lange, H Fu, Y Chen… - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
Advances in imaging technology and fluorescent calcium indicators have increased the
popularity of the application of miniature microscopes (miniscope) in freely-moving rodents …

Predictive signals in visual cortex: How experience and expectations shape visual processing

K Seignette - 2024 - research.vu.nl
Our visual perception is not simply a continuous picture of the world. It is heavily influenced
by context, prior experience and most importantly: predictions. We constantly predict the …

Fast Neuronal Segmentation of Two-Photon Functional Imaging Recordings Using CITE-On Marco Brondi, Luca Sità, Sebastiano Curreli, and Tommaso Fellin

M Brondi - Identification, Characterization, and Manipulation of … - books.google.com
Two-photon imaging is a powerful method to record the activity of neuronal ensembles in the
intact animal brain. Here, we describe a protocol to run a recent analytical approach, CITE …