How RNA folds

I Tinoco Jr, C Bustamante - Journal of molecular biology, 1999 - Elsevier
We describe the RNA folding problem and contrast it with the much more difficult protein
folding problem. RNA has four similar monomer units, whereas proteins have 20 very …

tRNA's wobble decoding of the genome: 40 years of modification

PF Agris, FAP Vendeix, WD Graham - Journal of molecular biology, 2007 - Elsevier
The genetic code is degenerate, in that 20 amino acids are encoded by 61 triplet codes. In
1966, Francis Crick hypothesized that the cell's limited number of tRNAs decoded the …

FARFAR2: improved de novo rosetta prediction of complex global RNA folds

AM Watkins, R Rangan, R Das - Structure, 2020 - cell.com
Predicting RNA three-dimensional structures from sequence could accelerate
understanding of the growing number of RNA molecules being discovered across biology …

Thermodynamics and NMR of internal G⊙ T mismatches in DNA

HT Allawi, J SantaLucia - Biochemistry, 1997 - ACS Publications
Thermodynamics of 39 oligonucleotides with internal G⊙ T mismatches dissolved in 1 M
NaCl were determined from UV absorbance versus temperature profiles. These data were …

Tertiary motifs in RNA structure and folding

RT Batey, RP Rambo… - Angewandte Chemie …, 1999 - Wiley Online Library
Specific tertiary structural motifs determine the complete architecture of RNA molecules (see
picture for examples). Within the last few years a number of high‐resolution crystal structures …

Automated de novo prediction of native-like RNA tertiary structures

R Das, D Baker - Proceedings of the National Academy of …, 2007 - National Acad Sciences
RNA tertiary structure prediction has been based almost entirely on base-pairing constraints
derived from phylogenetic covariation analysis. We describe here a complementary …

Exceptionally stable nucleic acid hairpins.

G Varani - Annual review of biophysics and biomolecular structure, 1995 - europepmc.org
Hairpins represent the dominant secondary structure element in RNA. Certain sequences
are found with exceptional frequency in many RNAs and are characterized by exceptionally …

The use of NMR methods for conformational studies of nucleic acids

SS Wijmenga, BNM Van Buuren - Progress in nuclear magnetic resonance …, 1998 - Elsevier
Nucleic acid molecules play a central role in cell biological processes. DNA's main role is to
act as the carrier of genetic information. Furthermore, DNA is transcribed into RNA by a …

Thermodynamics of internal C· T mismatches in DNA

HT Allawi, J SantaLucia Jr - Nucleic acids research, 1998 - academic.oup.com
Thermodynamics of 23 oligonucleotides with internal single C· T mismatches were obtained
by measuring UV absorbance as a function of temperature. Results from these 23 duplexes …

NMR investigation of RNA structure

G Varani, F Aboul-Ela, FHT Allain - Progress in Nuclear Magnetic …, 1996 - Elsevier
The many important biological functions of RNA range from propagation of genetic
information to catalysis in RNA processing and protein synthesis [l]. This diverse array of …