Redefining fundamental concepts of transcription initiation in bacteria
Despite enormous progress in understanding the fundamentals of bacterial gene regulation,
our knowledge remains limited when compared with the number of bacterial genomes and …
our knowledge remains limited when compared with the number of bacterial genomes and …
CRISPR Tools for Engineering Prokaryotic Systems: Recent Advances and New Applications
In the past decades, the broad selection of CRISPR-Cas systems has revolutionized
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …
Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination
E Gonzalez, FE Pitre, AP Pagé, J Marleau… - Microbiome, 2018 - Springer
Background One method for rejuvenating land polluted with anthropogenic contaminants is
through phytoremediation, the reclamation of land through the cultivation of specific crops …
through phytoremediation, the reclamation of land through the cultivation of specific crops …
The Transcription Unit Architecture of Streptomyces lividans TK24
Streptomyces lividans is an attractive host for production of heterologous proteins and
secondary metabolites of other Streptomyces species. To fully harness the industrial …
secondary metabolites of other Streptomyces species. To fully harness the industrial …
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and …
Efficient and highly organized regulation of transcription is fundamental to an organism's
ability to survive, proliferate, and quickly respond to its environment. Therefore, precise …
ability to survive, proliferate, and quickly respond to its environment. Therefore, precise …
Mining Novel Constitutive Promoter Elements in Soil Metagenomic Libraries in Escherichia coli
Although functional metagenomics has been widely employed for the discovery of genes
relevant to biotechnology and biomedicine, its potential for assessing the diversity of …
relevant to biotechnology and biomedicine, its potential for assessing the diversity of …
Transcriptomics-driven characterization of LUZ100, a T7-like Pseudomonas phage with temperate features
L Putzeys, J Poppeliers, M Boon, C Lood, M Vallino… - Msystems, 2023 - Am Soc Microbiol
Autographiviridae is a diverse yet distinct family of bacterial viruses marked by a strictly lytic
lifestyle and a generally conserved genome organization. Here, we characterized …
lifestyle and a generally conserved genome organization. Here, we characterized …
Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information
Background The gram-positive bacterium, Streptomyces avermitilis, holds industrial
importance as the producer of avermectin, a widely used anthelmintic agent, and a …
importance as the producer of avermectin, a widely used anthelmintic agent, and a …
Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low-versus high-expressing operons
Many bacteria use operons to coregulate genes, but it remains unclear how operons benefit
bacteria. We integrated E. coli's 788 polycistronic operons and 1,231 transcription units into …
bacteria. We integrated E. coli's 788 polycistronic operons and 1,231 transcription units into …
BAC-BROWSER: the tool for visualization and analysis of prokaryotic genomes
IA Garanina, GY Fisunov, VM Govorun - Frontiers in microbiology, 2018 - frontiersin.org
Prokaryotes are actively studied objects in the scope of genomic regulation. Microbiologists
need special tools for complex analysis of data to study and identification of regulatory …
need special tools for complex analysis of data to study and identification of regulatory …