Reflecting on 25 years with MYC
N Meyer, LZ Penn - Nature Reviews Cancer, 2008 - nature.com
Just over 25 years ago, MYC, the human homologue of a retroviral oncogene, was
identified. Since that time, MYC research has been intense and the advances impressive …
identified. Since that time, MYC research has been intense and the advances impressive …
Fluorescent probes for G‐quadruplex structures
BR Vummidi, J Alzeer, NW Luedtke - ChemBioChem, 2013 - Wiley Online Library
Mounting evidence supports the presence of biologically relevant G‐quadruplexes in single‐
cell organisms, but the existence of endogenous G‐quadruplex structures in mammalian …
cell organisms, but the existence of endogenous G‐quadruplex structures in mammalian …
Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome
F Kouzine, D Wojtowicz, L Baranello, A Yamane… - Cell systems, 2017 - cell.com
DNA in cells is predominantly B-form double helix. Though certain DNA sequences in vitro
may fold into other structures, such as triplex, left-handed Z form, or quadruplex DNA, the …
may fold into other structures, such as triplex, left-handed Z form, or quadruplex DNA, the …
The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and …
D Sun, LH Hurley - Journal of medicinal chemistry, 2009 - ACS Publications
The importance of DNA supercoiling in transcriptional regulation has been known for many
years, and more recently, transcription itself has been shown to be a source of this …
years, and more recently, transcription itself has been shown to be a source of this …
The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics
MYC is deregulated in most tumour types, but an effective means to selectively target its
aberrant expression is not yet available. Supercoiling that is induced by transcription has …
aberrant expression is not yet available. Supercoiling that is induced by transcription has …
Transcription-dependent dynamic supercoiling is a short-range genomic force
F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
Toward the dynamic interactome: it's about time
TM Przytycka, M Singh, DK Slonim - Briefings in bioinformatics, 2010 - academic.oup.com
Dynamic molecular interactions play a central role in regulating the functioning of cells and
organisms. The availability of experimentally determined large-scale cellular networks …
organisms. The availability of experimentally determined large-scale cellular networks …
Functional mechanisms of microsatellite DNA in eukaryotic genomes
ATM Bagshaw - Genome biology and evolution, 2017 - academic.oup.com
Microsatellite repeat DNA is best known for its length mutability, which is implicated in
several neurological diseases and cancers, and often exploited as a genetic marker. Less …
several neurological diseases and cancers, and often exploited as a genetic marker. Less …
The functional response of upstream DNA to dynamic supercoiling in vivo
F Kouzine, S Sanford, Z Elisha-Feil… - Nature structural & …, 2008 - nature.com
Because RNA polymerase is a powerful motor, transmission of transcription-generated
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …
Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements
Tandem repeats are genomic elements that are prone to changes in repeat number and are
thus often polymorphic. These sequences are found at a high density at the start of human …
thus often polymorphic. These sequences are found at a high density at the start of human …