Reflecting on 25 years with MYC

N Meyer, LZ Penn - Nature Reviews Cancer, 2008 - nature.com
Just over 25 years ago, MYC, the human homologue of a retroviral oncogene, was
identified. Since that time, MYC research has been intense and the advances impressive …

Fluorescent probes for G‐quadruplex structures

BR Vummidi, J Alzeer, NW Luedtke - ChemBioChem, 2013 - Wiley Online Library
Mounting evidence supports the presence of biologically relevant G‐quadruplexes in single‐
cell organisms, but the existence of endogenous G‐quadruplex structures in mammalian …

Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome

F Kouzine, D Wojtowicz, L Baranello, A Yamane… - Cell systems, 2017 - cell.com
DNA in cells is predominantly B-form double helix. Though certain DNA sequences in vitro
may fold into other structures, such as triplex, left-handed Z form, or quadruplex DNA, the …

The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and …

D Sun, LH Hurley - Journal of medicinal chemistry, 2009 - ACS Publications
The importance of DNA supercoiling in transcriptional regulation has been known for many
years, and more recently, transcription itself has been shown to be a source of this …

The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics

TA Brooks, LH Hurley - Nature Reviews Cancer, 2009 - nature.com
MYC is deregulated in most tumour types, but an effective means to selectively target its
aberrant expression is not yet available. Supercoiling that is induced by transcription has …

Transcription-dependent dynamic supercoiling is a short-range genomic force

F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …

Toward the dynamic interactome: it's about time

TM Przytycka, M Singh, DK Slonim - Briefings in bioinformatics, 2010 - academic.oup.com
Dynamic molecular interactions play a central role in regulating the functioning of cells and
organisms. The availability of experimentally determined large-scale cellular networks …

Functional mechanisms of microsatellite DNA in eukaryotic genomes

ATM Bagshaw - Genome biology and evolution, 2017 - academic.oup.com
Microsatellite repeat DNA is best known for its length mutability, which is implicated in
several neurological diseases and cancers, and often exploited as a genetic marker. Less …

The functional response of upstream DNA to dynamic supercoiling in vivo

F Kouzine, S Sanford, Z Elisha-Feil… - Nature structural & …, 2008 - nature.com
Because RNA polymerase is a powerful motor, transmission of transcription-generated
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …

Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements

S Sawaya, A Bagshaw, E Buschiazzo, P Kumar… - PloS one, 2013 - journals.plos.org
Tandem repeats are genomic elements that are prone to changes in repeat number and are
thus often polymorphic. These sequences are found at a high density at the start of human …