Containers for computational reproducibility
The fast-paced development of computational tools has enabled tremendous scientific
progress in recent years. However, this rapid surge of technological capability also comes at …
progress in recent years. However, this rapid surge of technological capability also comes at …
Issues and recommendations from the OHBM COBIDAS MEEG committee for reproducible EEG and MEG research
Abstract The Organization for Human Brain Mapping (OHBM) has been active in advocating
for the instantiation of best practices in neuroimaging data acquisition, analysis, reporting …
for the instantiation of best practices in neuroimaging data acquisition, analysis, reporting …
[HTML][HTML] Brian 2, an intuitive and efficient neural simulator
Brian 2 allows scientists to simply and efficiently simulate spiking neural network models.
These models can feature novel dynamical equations, their interactions with the …
These models can feature novel dynamical equations, their interactions with the …
[HTML][HTML] Open science challenges, benefits and tips in early career and beyond
C Allen, DMA Mehler - PLoS biology, 2019 - journals.plos.org
The movement towards open science is a consequence of seemingly pervasive failures to
replicate previous research. This transition comes with great benefits but also significant …
replicate previous research. This transition comes with great benefits but also significant …
Why don't we share data and code? Perceived barriers and benefits to public archiving practices
The biological sciences community is increasingly recognizing the value of open,
reproducible and transparent research practices for science and society at large. Despite …
reproducible and transparent research practices for science and society at large. Despite …
Reproducibility in neuroimaging analysis: challenges and solutions
R Botvinik-Nezer, TD Wager - Biological Psychiatry: Cognitive …, 2023 - Elsevier
Recent years have marked a renaissance in efforts to increase research reproducibility in
psychology, neuroscience, and related fields. Reproducibility is the cornerstone of a solid …
psychology, neuroscience, and related fields. Reproducibility is the cornerstone of a solid …
[HTML][HTML] NeuroMatic: an integrated open-source software toolkit for acquisition, analysis and simulation of electrophysiological data
JS Rothman, RA Silver - Frontiers in neuroinformatics, 2018 - frontiersin.org
Acquisition, analysis and simulation of electrophysiological properties of the nervous system
require multiple software packages. This makes it difficult to conserve experimental …
require multiple software packages. This makes it difficult to conserve experimental …
Developing image analysis methods for digital pathology
P Bankhead - The Journal of pathology, 2022 - Wiley Online Library
The potential to use quantitative image analysis and artificial intelligence is one of the
driving forces behind digital pathology. However, despite novel image analysis methods for …
driving forces behind digital pathology. However, despite novel image analysis methods for …
Integrated analysis of anatomical and electrophysiological human intracranial data
Human intracranial electroencephalography (iEEG) recordings provide data with much
greater spatiotemporal precision than is possible from data obtained using scalp EEG …
greater spatiotemporal precision than is possible from data obtained using scalp EEG …
Knowledge‐based radiation treatment planning: a data‐driven method survey
This paper surveys the data‐driven dose prediction methods investigated for knowledge‐
based planning (KBP) in the last decade. These methods were classified into two major …
based planning (KBP) in the last decade. These methods were classified into two major …