Genomic Selection in the Era of Next Generation Sequencing for Complex Traits in Plant Breeding

JA Bhat, S Ali, RK Salgotra, ZA Mir, S Dutta… - Frontiers in …, 2016 - frontiersin.org
Genomic selection (GS) is a promising approach exploiting molecular genetic markers to
design novel breeding programs and to develop new markers-based models for genetic …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

[图书][B] Genetic data analysis for plant and animal breeding

F Isik, J Holland, C Maltecca - 2017 - Springer
We wrote this book to fill the gap between textbooks of quantitative genetic theory and
software manuals that provide details on analytical methods but little context or perspective …

Training set optimization under population structure in genomic selection

J Isidro, JL Jannink, D Akdemir, J Poland… - Theoretical and applied …, 2015 - Springer
Key message Population structure must be evaluated before optimization of the training set
population. Maximizing the phenotypic variance captured by the training set is important for …

[HTML][HTML] Invited review: Beef-on-dairy—The generation of crossbred beef× dairy cattle

DP Berry - Journal of Dairy Science, 2021 - Elsevier
Because a growing proportion of the beef output in many countries originates from dairy
herds, the most critical decisions about the genetic merit of most carcasses harvested are …

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

BJ Hayes, HA Lewin, ME Goddard - Trends in genetics, 2013 - cell.com
As the global population and global wealth both continue to increase, so will the demand for
livestock products, especially those that are highly nutritious. However, competition with …

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …

[PDF][PDF] Current status of genomic evaluation

I Misztal, D Lourenco, A Legarra - Journal of Animal Science, 2020 - academic.oup.com
Early application of genomic selection relied on SNP estimation with phenotypes or de-
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …

Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments

VS Windhausen, GN Atlin, JM Hickey… - G3: Genes| genomes …, 2012 - academic.oup.com
Genomic prediction is expected to considerably increase genetic gains by increasing
selection intensity and accelerating the breeding cycle. In this study, marker effects …

A class of Bayesian methods to combine large numbers of genotyped and non-genotyped animals for whole-genome analyses

RL Fernando, JCM Dekkers, DJ Garrick - Genetics Selection Evolution, 2014 - Springer
Background To obtain predictions that are not biased by selection, the conditional mean of
the breeding values must be computed given the data that were used for selection. When …