Diversity, stability and resilience of the human gut microbiota

CA Lozupone, JI Stombaugh, JI Gordon, JK Jansson… - Nature, 2012 - nature.com
Trillions of microbes inhabit the human intestine, forming a complex ecological community
that influences normal physiology and susceptibility to disease through its collective …

Richness of human gut microbiome correlates with metabolic markers

E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand… - Nature, 2013 - nature.com
We are facing a global metabolic health crisis provoked by an obesity epidemic. Here we
report the human gut microbial composition in a population sample of 123 non-obese and …

Looking for a signal in the noise: revisiting obesity and the microbiome

MA Sze, PD Schloss - MBio, 2016 - Am Soc Microbiol
Two recent studies have reanalyzed previously published data and found that when data
sets were analyzed independently, there was limited support for the widely accepted …

Blueberry polyphenols extract as a potential prebiotic with anti-obesity effects on C57BL/6 J mice by modulating the gut microbiota

X Jiao, Y Wang, Y Lin, Y Lang, E Li, X Zhang… - The Journal of …, 2019 - Elsevier
Polyphenols are known for their various health benefits. Blueberries are dietary sources of
polyphenols with reported health benefits. However, the role of blueberry polyphenols in …

[HTML][HTML] Dirichlet multinomial mixtures: generative models for microbial metagenomics

I Holmes, K Harris, C Quince - PloS one, 2012 - journals.plos.org
We introduce Dirichlet multinomial mixtures (DMM) for the probabilistic modelling of
microbial metagenomics data. This data can be represented as a frequency matrix giving the …

Advances in the methods for studying gut microbiota and their relevance to the research of dietary fiber functions

J Gong, C Yang - Food Research International, 2012 - Elsevier
The gut microbiota has long been of research interest due to its importance to human health,
nutrition, and well-being. A healthy gut microbiota (properly balanced bacterial groups) is …

[HTML][HTML] Fecal microbiota in premature infants prior to necrotizing enterocolitis

V Mai, CM Young, M Ukhanova, X Wang, Y Sun… - PloS one, 2011 - journals.plos.org
Intestinal luminal microbiota likely contribute to the etiology of necrotizing enterocolitis
(NEC), a common disease in preterm infants. Microbiota development, a cascade of initial …

[HTML][HTML] Fecal Microbial Diversity in Pre-Weaned Dairy Calves as Described by Pyrosequencing of Metagenomic 16S rDNA. Associations of Faecalibacterium …

G Oikonomou, AGV Teixeira, C Foditsch, ML Bicalho… - PloS one, 2013 - journals.plos.org
In this study, we use barcoded pyrosequencing of the 16S rRNA gene to characterize the
fecal microbiota of neonatal calves and identify possible relationships of certain microbiota …

Effects of almond and pistachio consumption on gut microbiota composition in a randomised cross-over human feeding study

M Ukhanova, X Wang, DJ Baer, JA Novotny… - British Journal of …, 2014 - cambridge.org
The modification of microbiota composition to a 'beneficial'one is a promising approach for
improving intestinal as well as overall health. Natural fibres and phytochemicals that reach …

[HTML][HTML] A comparison of methods for clustering 16S rRNA sequences into OTUs

W Chen, CK Zhang, Y Cheng, S Zhang, H Zhao - PloS one, 2013 - journals.plos.org
Recent studies of 16S rRNA sequences through next-generation sequencing have
revolutionized our understanding of the microbial community composition and structure. One …