Interactions of electrons with bare and hydrated biomolecules: From nucleic acid bases to DNA segments

J Gu, J Leszczynski, HF Schaefer III - Chemical reviews, 2012 - ACS Publications
The broadest motivation for exploring electron attachment to biological molecules comes
from their important role in radiation damage. Large quantities of secondary electrons with …

The role of proton transfer on mutations

R Srivastava - Frontiers in Chemistry, 2019 - frontiersin.org
Hydrogen bonds play a critical role in nucleobase studies as they encode genes, map
protein structures, provide stability to the base pairs, and are involved in spontaneous and …

Nucleobase-specific quenching of fluorescent dyes. 1. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies

CAM Seidel, A Schulz, MHM Sauer - The Journal of Physical …, 1996 - ACS Publications
Intermolecular static and dynamic fluorescence quenching constants of eight coumarin
derivatives by nucleobase derivatives have been determined in aqueous media. One …

Electrochemistry of methylene blue bound to a DNA-modified electrode

SO Kelley, JK Barton, NM Jackson… - Bioconjugate …, 1997 - ACS Publications
Gold surfaces have been derivatized with 15-base-pair double-stranded DNA
oligonucleotides containing a pendant 5 'hexanethiol linker. The electrochemistry of …

Theoretical studies of GG-specific photocleavage of DNA via electron transfer: significant lowering of ionization potential and 5 '-localization of HOMO of stacked GG …

H Sugiyama, I Saito - Journal of the american chemical society, 1996 - ACS Publications
Ab initio molecular orbital calculations of stacked DNA bases were performed at the 3-21G
(*) and 6-31G* levels to elucidate the origin of the 5 '-GG-3 'sequence specificity for the …

Nature of nucleic acid− base stacking: nonempirical ab initio and empirical potential characterization of 10 stacked base dimers. Comparison of stacked and H …

J Šponer, J Leszczyński, P Hobza - The Journal of Physical …, 1996 - ACS Publications
Ab initio (MP2/6-31G*(0.25)) interaction energies were calculated for almost 240 geometries
of 10 stacked nucleic acid− base pairs: A⊙⊙⊙ A, C⊙⊙⊙ C, G⊙⊙⊙ G, U⊙⊙⊙ U …

Charge hopping in DNA

YA Berlin, AL Burin, MA Ratner - Journal of the American …, 2001 - ACS Publications
The efficiency of charge migration through stacked Watson− Crick base pairs is analyzed for
coherent hole motion interrupted by localization on guanine (G) bases. Our analysis rests on …

UV-induced proton transfer between DNA strands

Y Zhang, K de La Harpe, AA Beckstead… - Journal of the …, 2015 - ACS Publications
UV radiation creates excited states in DNA that lead to mutagenic photoproducts.
Photoexcitation of single-stranded DNA can transfer an electron between stacked bases, but …

Photoinduced electron transfer in ethidium-modified DNA duplexes: dependence on distance and base stacking

SO Kelley, RE Holmlin, EDA Stemp… - Journal of the American …, 1997 - ACS Publications
Long-range photoinduced electron transfer has been systematically examined in a series of
small DNA duplexes covalently modified with ethidium and Rh (phi) 2bpy3+ through time …

Dipole bound, nucleic acid base anions studied via negative ion photoelectron spectroscopy

JH Hendricks, SA Lyapustina, HL De Clercq… - The Journal of …, 1996 - pubs.aip.org
The anions of the nucleic acid bases, uracil and thymine, were studied by negative ion
photoelectron spectroscopy. Both monomer anions exhibit spectroscopic signatures that are …