Ten common issues with reference sequence databases and how to mitigate them

SD Chorlton - Frontiers in Bioinformatics, 2024 - frontiersin.org
Metagenomic sequencing has revolutionized our understanding of microbiology. While
metagenomic tools and approaches have been extensively evaluated and benchmarked, far …

Isolation, characterization, and circulation sphere of a filovirus in fruit bats

B He, T Hu, X Yan, Y Pa, Y Liu, Y Liu… - Proceedings of the …, 2024 - National Acad Sciences
Bats are associated with the circulation of most mammalian filoviruses (FiVs), with
pathogenic ones frequently causing deadly hemorrhagic fevers in Africa. Divergent FiVs …

The links between dietary diversity and RNA virus diversity harbored by the great evening bat (Ia io)

Z Huang, Z Wang, Y Liu, C Ke, J Feng, B He, T Jiang - Microbiome, 2024 - Springer
Background Predator‒prey interactions and their dynamic changes provide frequent
opportunities for viruses to spread among organisms and thus affect their virus diversity …

Virome Profiling of an Amur leopard cat Reveals Multiple Anelloviruses and a Bocaparvovirus

Y Liu, L Sun, Z Tu, S Sun, Y Sun, L Yi, C Tu, B He - Veterinary Sciences, 2022 - mdpi.com
Simple Summary Wildlife constitutes an essential part of the biodiversity on our planet.
However, many factors put numerous species at the risk of extinction, among which …

Virome profiling of an Eastern roe deer reveals spillover of viruses from domestic animals to wildlife

Y Sun, L Sun, S Sun, Z Tu, Y Liu, L Yi, C Tu, B He - Pathogens, 2023 - mdpi.com
Eastern roe deer (Capreolus pygargus) is a small ruminant and is widespread across China.
This creature plays an important role in our ecological system. Although a few studies have …

Isolation and Identification of Severe Fever with Thrombocytopenia Syndrome Virus from Farmed Mink in Shandong, China

X Meng, J Sun, M Yao, Y Sun, H Xu… - Transboundary and …, 2024 - Wiley Online Library
Severe fever with thrombocytopenia syndrome (SFTS) virus, recently named Bandavirus
dabieense, belongs to the genus Bandavirus of family Phenuiviridae, and it causes SFTS in …

The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses

C Li, Y Hu, Y Liu, N Li, L Yi, C Tu, B He - Virus Evolution, 2024 - academic.oup.com
Amphibians are an essential class in the maintenance of global ecosystem equilibrium, but
they face serious extinction risks driven by climate change and infectious diseases …

DNA virome of ticks in the Northeast and Hubei provinces of China reveals diverse single-stranded circular DNA viruses

Y Liu, L Guo, G Wang, F Gao, Z Tu, D Xu, L Sun, L Yi… - Parasites & …, 2023 - Springer
Background Ticks are medically important vectors capable of transmitting a variety of
pathogens to and between host species. Although the spectrum of tick-borne RNA viruses …

Virome profiling of chickens with hepatomegaly rupture syndrome reveals coinfection of multiple viruses

G Wang, Y He, X Yan, Y Sun, L Yi, C Tu, B He - Viruses, 2023 - mdpi.com
Liver diseases seriously challenge the health of chickens raised on scaled farms and cause
tremendous economic losses to farm owners. The causative agents for liver diseases are …

[PDF][PDF] Virome Profiling of an Eastern Roe Deer Reveals Spillover of Viruses from Domestic Animals to Wildlife. Pathogens 2023, 12, 156

Y Sun, L Sun, S Sun, Z Tu, Y Liu, L Yi, C Tu, B He - 2023 - pdfs.semanticscholar.org
Eastern roe deer (Capreolus pygargus) is a small ruminant and is widespread across China.
This creature plays an important role in our ecological system. Although a few studies have …