Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Designing artificial metalloenzymes by tuning of the environment beyond the primary coordination sphere

C Van Stappen, Y Deng, Y Liu, H Heidari… - Chemical …, 2022 - ACS Publications
Metalloenzymes catalyze a variety of reactions using a limited number of natural amino
acids and metallocofactors. Therefore, the environment beyond the primary coordination …

Engineering new catalytic activities in enzymes

K Chen, FH Arnold - Nature Catalysis, 2020 - nature.com
The efficiency, selectivity and sustainability benefits offered by enzymes are enticing
chemists to consider biocatalytic transformations to complement or even supplant more …

Stereodivergent atom-transfer radical cyclization by engineered cytochromes P450

Q Zhou, M Chin, Y Fu, P Liu, Y Yang - Science, 2021 - science.org
Naturally occurring enzymes can be a source of unnatural reactivity that can be molded by
directed evolution to generate efficient biocatalysts with valuable activities. Owing to the lack …

Machine learning-assisted directed protein evolution with combinatorial libraries

Z Wu, SBJ Kan, RD Lewis… - Proceedings of the …, 2019 - National Acad Sciences
To reduce experimental effort associated with directed protein evolution and to explore the
sequence space encoded by mutating multiple positions simultaneously, we incorporate …

[PDF][PDF] Innovation by evolution: bringing new chemistry to life (Nobel Lecture)

FH Arnold - Angew. Chem. Int. Ed, 2019 - fenix.ciencias.ulisboa.pt
I am a chemist and engineer who looks upon the living world with the deepest admiration.
Nature, herself a brilliant chemist and by far the best engineer of all time, invented life that …

Machine learning-guided co-optimization of fitness and diversity facilitates combinatorial library design in enzyme engineering

K Ding, M Chin, Y Zhao, W Huang, BK Mai… - Nature …, 2024 - nature.com
The effective design of combinatorial libraries to balance fitness and diversity facilitates the
engineering of useful enzyme functions, particularly those that are poorly characterized or …

The importance of catalytic promiscuity for enzyme design and evolution

RB Leveson-Gower, C Mayer, G Roelfes - Nature Reviews Chemistry, 2019 - nature.com
The ability of one enzyme to catalyse multiple, mechanistically distinct transformations likely
played a crucial role in organisms' abilities to adapt to changing external stimuli in the past …

Artificial metalloenzymes: challenges and opportunities

HJ Davis, TR Ward - ACS central science, 2019 - ACS Publications
Artificial metalloenzymes (ArMs) result from the incorporation of an abiotic metal cofactor
within a protein scaffold. From the earliest techniques of transition metals adsorbed on silk …

Carbene radicals in transition-metal-catalyzed reactions

RFJ Epping, D Vesseur, M Zhou, B de Bruin - ACS catalysis, 2023 - ACS Publications
Discovered as organometallic curiosities in the 1970s, carbene radicals have become a
staple in modern-day homogeneous catalysis. Carbene radicals exhibit nucleophilic radical …