A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

DH Parks, M Chuvochina, DW Waite, C Rinke… - Nature …, 2018 - nature.com
Taxonomy is an organizing principle of biology and is ideally based on evolutionary
relationships among organisms. Development of a robust bacterial taxonomy has been …

Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)

T Cavalier-Smith, EEY Chao - Protoplasma, 2020 - Springer
Palaeontologically, eubacteria are> 3× older than neomura (eukaryotes, archaebacteria).
Cell biology contrasts ancestral eubacterial murein peptidoglycan walls and derived …

Shotgun metagenomics reveals the benthic microbial community response to plastic and bioplastic in a coastal marine environment

LJ Pinnell, JW Turner - Frontiers in microbiology, 2019 - frontiersin.org
Plastic is incredibly abundant in marine environments but little is known about its effects on
benthic microbiota and biogeochemical cycling. This study reports the shotgun …

A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

CD Vavourakis, AS Andrei, M Mehrshad, R Ghai… - Microbiome, 2018 - Springer
Background Hypersaline soda lakes are characterized by extreme high soluble carbonate
alkalinity. Despite the high pH and salt content, highly diverse microbial communities are …

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

O Svartström, J Alneberg, N Terrapon… - The ISME …, 2017 - academic.oup.com
The moose (Alces alces) is a ruminant that harvests energy from fiber-rich lignocellulose
material through carbohydrate-active enzymes (CAZymes) produced by its rumen microbes …

Effects of microplastics accumulation on performance of membrane bioreactor for wastewater treatment

QY Wang, YL Li, YY Liu, Z Zhou, WJ Hu, LF Lin, ZC Wu - Chemosphere, 2022 - Elsevier
The effective interception of membrane leads to the accumulation of microplastics (MPs) in
membrane bioreactor (MBR) process for long-term operation. However, the influence of MPs …

Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

Y Wang, JM Huang, YL Zhou, A Almeida, RD Finn… - BMC genomics, 2020 - Springer
Background The metabolic capacity, stress response and evolution of uncultured
environmental Tenericutes have remained elusive, since previous studies have been largely …

[HTML][HTML] Dietary ellagic acid supplementation attenuates intestinal damage and oxidative stress by regulating gut microbiota in weanling piglets

W Qin, B Xu, Y Chen, W Yang, Y Xu, J Huang, T Duo… - Animal nutrition, 2022 - Elsevier
Intestinal oxidative stress triggers gut microbiota dysbiosis, which is involved in the etiology
of post-weaning diarrhea and enteric infections. Ellagic acid (EA) can potentially serve as an …

Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments

K Wasmund, C Pelikan, A Schintlmeister… - Nature …, 2021 - nature.com
Extracellular DNA is a major macromolecule in global element cycles, and is a particularly
crucial phosphorus, nitrogen and carbon source for microorganisms in the seafloor …

Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily

DR Speth, FB Yu, SA Connon, S Lim… - The ISME …, 2022 - academic.oup.com
Hydrothermal vents have been key to our understanding of the limits of life, and the
metabolic and phylogenetic diversity of thermophilic organisms. Here we used …