Genome reduction as the dominant mode of evolution

YI Wolf, EV Koonin - Bioessays, 2013 - Wiley Online Library
A common belief is that evolution generally proceeds towards greater complexity at both the
organismal and the genomic level, numerous examples of reductive evolution of parasites …

Complex pigment evolution in the Caryophyllales

SF Brockington, RH Walker, BJ Glover… - New …, 2011 - Wiley Online Library
Carotenoids and flavonoids including anthocyanins are the predominant pigments in
flowering plants, where they play important roles in pollination, seed dispersal, protection …

phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

A Moura, A Criscuolo, H Pouseele, MM Maury… - Nature …, 2016 - nature.com
Listeria monocytogenes (Lm) is a major human foodborne pathogen. Numerous Lm
outbreaks have been reported worldwide and associated with a high case fatality rate …

Symbioses shape feeding niches and diversification across insects

CK Cornwallis, A van't Padje, J Ellers, M Klein… - Nature ecology & …, 2023 - nature.com
For over 300 million years, insects have relied on symbiotic microbes for nutrition and
defence. However, it is unclear whether specific ecological conditions have repeatedly …

[PDF][PDF] phytools: an R package for phylogenetic comparative biology (and other things)

LJ Revell - Methods in ecology and evolution, 2012 - drive.google.com
phytools: an R package for phylogenetic comparative biology (and other things) Page 1
APPLICATION phytools: an R package for phylogenetic comparative biology (and other things) …

The evolution of same-sex sexual behaviour in mammals

JM Gómez, A González-Megías, M Verdú - Nature Communications, 2023 - nature.com
Same-sex sexual behaviour has attracted the attention of many scientists working in
disparate areas, from sociology and psychology to behavioural and evolutionary biology …

The evolution of reproductive modes and life cycles in amphibians

HC Liedtke, JJ Wiens, I Gomez-Mestre - Nature communications, 2022 - nature.com
Amphibians have undergone important evolutionary transitions in reproductive modes and
life-cycles. We compare large-scale macroevolutionary patterns in these transitions across …

Genomic history of the seventh pandemic of cholera in Africa

FX Weill, D Domman, E Njamkepo, C Tarr, J Rauzier… - Science, 2017 - science.org
The seventh cholera pandemic has heavily affected Africa, although the origin and
continental spread of the disease remain undefined. We used genomic data from 1070 …

Timing the evolution of antioxidant enzymes in cyanobacteria

JS Boden, KO Konhauser, LJ Robbins… - Nature …, 2021 - nature.com
The ancestors of cyanobacteria generated Earth's first biogenic molecular oxygen, but how
they dealt with oxidative stress remains unconstrained. Here we investigate when …