New twists in detecting mRNA modification dynamics

I Anreiter, Q Mir, JT Simpson, SC Janga, M Soller - Trends in Biotechnology, 2021 - cell.com
Modified nucleotides in mRNA are an essential addition to the standard genetic code of four
nucleotides in animals, plants, and their viruses. The emerging field of epitranscriptomics …

Generating amplicon reads for microbial community assessment with next‐generation sequencing

M Gołębiewski, A Tretyn - Journal of Applied Microbiology, 2020 - academic.oup.com
Marker gene amplicon sequencing is often preferred over whole genome sequencing for
microbial community characterization, due to its lower cost while still enabling assessment of …

Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores

S Namani, K Kavetsky, CY Lin, S Maharjan… - ACS …, 2024 - ACS Publications
This study investigates transfer ribonucleic acid (tRNA) conformational dynamics in the
context of MELAS (mitochondrial encephalomyopathy, lactic acidosis, and stroke-like …

RNA biomarkers: diagnostic and prognostic potentials and recent developments of electrochemical biosensors

MN Islam, MK Masud, MH Haque, MSA Hossain… - Small …, 2017 - Wiley Online Library
Ribonucleic acids (RNAs) are considered as effective and minimally invasive biomarkers for
disease diagnosis and prognosis due to their critical role in the regulation of different cellular …

MicroRNAs in ovarian cancer and recent advances in the development of microRNA-based biosensors

NB Aziz, RG Mahmudunnabi, M Umer, S Sharma… - Analyst, 2020 - pubs.rsc.org
Ovarian cancer is the most aggressive of all gynaecological malignancies and is the leading
cause of cancer-associated mortality worldwide. Over the recent years, there has been a …

Topological and physical links in soft matter systems

E Orlandini, C Micheletti - Journal of Physics: Condensed Matter, 2021 - iopscience.iop.org
Linking, or multicomponent topological entanglement, is ubiquitous in soft matter systems,
from mixtures of polymers and DNA filaments packed in vivo to interlocked line defects in …

Ribosome fingerprinting with a solid-state nanopore

M Raveendran, AR Leach, T Hopes, JL Aspden… - ACS …, 2020 - ACS Publications
Nanopores hold great potential for the analysis of complex biological molecules at the single-
entity level. One particularly interesting macromolecular machine is the ribosome …

Wavelet denoising of high-bandwidth nanopore and ion-channel signals

S Shekar, CC Chien, A Hartel, P Ong, OB Clarke… - Nano …, 2019 - ACS Publications
Recent work has pushed the noise-limited bandwidths of solid-state nanopore conductance
recordings to more than 5 MHz and of ion channel conductance recordings to more than 500 …

Next-generation sequencing technologies in blood group typing

D Fürst, C Tsamadou, C Neuchel… - Transfusion Medicine …, 2020 - karger.com
Sequencing of the human genome has led to the definition of the genes for most of the
relevant blood group systems, and the polymorphisms responsible for most of the clinically …

Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification

JM Warren, T Salinas-Giegé, G Hummel, NL Coots… - RNA biology, 2021 - Taylor & Francis
Differences in tRNA expression have been implicated in a remarkable number of biological
processes. There is growing evidence that tRNA genes can play dramatically different roles …