Dynamic alternative DNA structures in biology and disease
G Wang, KM Vasquez - Nature Reviews Genetics, 2023 - nature.com
Repetitive elements in the human genome, once considered 'junk DNA', are now known to
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …
DNA secondary structures: stability and function of G-quadruplex structures
ML Bochman, K Paeschke, VA Zakian - Nature Reviews Genetics, 2012 - nature.com
In addition to the canonical double helix, DNA can fold into various other inter-and
intramolecular secondary structures. Although many such structures were long thought to be …
intramolecular secondary structures. Although many such structures were long thought to be …
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
MR Lieber - Annual review of biochemistry, 2010 - annualreviews.org
Double-strand DNA breaks are common events in eukaryotic cells, and there are two major
pathways for repairing them: homologous recombination (HR) and nonhomologous DNA …
pathways for repairing them: homologous recombination (HR) and nonhomologous DNA …
Non-B DNA structure-induced genetic instability and evolution
J Zhao, A Bacolla, G Wang, KM Vasquez - Cellular and molecular life …, 2010 - Springer
Repetitive DNA motifs are abundant in the genomes of various species and have the
capacity to adopt non-canonical (ie, non-B) DNA structures. Several non-B DNA structures …
capacity to adopt non-canonical (ie, non-B) DNA structures. Several non-B DNA structures …
Molecular mechanisms and topological consequences of drastic chromosomal rearrangements of muntjac deer
Muntjac deer have experienced drastic karyotype changes during their speciation, making it
an ideal model for studying mechanisms and functional consequences of mammalian …
an ideal model for studying mechanisms and functional consequences of mammalian …
S1-END-seq reveals DNA secondary structures in human cells
DNA becomes single stranded (ssDNA) during replication, transcription, and repair.
Transiently formed ssDNA segments can adopt alternative conformations, including …
Transiently formed ssDNA segments can adopt alternative conformations, including …
Non-B DNA conformations, mutagenesis and disease
RD Wells - Trends in biochemical sciences, 2007 - cell.com
Recent discoveries have revealed that simple repeating DNA sequences, which are known
to adopt non-B DNA conformations (such as triplexes, cruciforms, slipped structures, left …
to adopt non-B DNA conformations (such as triplexes, cruciforms, slipped structures, left …
Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins
I Voineagu, V Narayanan… - Proceedings of the …, 2008 - National Acad Sciences
DNA inverted repeats (IRs) are hotspots of genomic instability in both prokaryotes and
eukaryotes. This feature is commonly attributed to their ability to fold into hairpin-or cruciform …
eukaryotes. This feature is commonly attributed to their ability to fold into hairpin-or cruciform …
Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability
G Wang, KM Vasquez - DNA repair, 2014 - Elsevier
Repetitive genomic sequences can adopt a number of alternative DNA structures that differ
from the canonical B-form duplex (ie non-B DNA). These non-B DNA-forming sequences …
from the canonical B-form duplex (ie non-B DNA). These non-B DNA-forming sequences …
Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences
Gross chromosomal rearrangements (including translocations, deletions, insertions and
duplications) are a hallmark of cancer genomes and often create oncogenic fusion genes …
duplications) are a hallmark of cancer genomes and often create oncogenic fusion genes …