Status and prospects of genome‐wide association studies in plants
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …
tool for the investigation of complex traits. In large part, this was fueled by advances in …
Learning from co-expression networks: possibilities and challenges
EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …
organization, function and evolution of plant genes is essential to disentangle important …
ATTED-II v11: a plant gene coexpression database using a sample balancing technique by subagging of principal components
T Obayashi, H Hibara, Y Kagaya, Y Aoki… - Plant and Cell …, 2022 - academic.oup.com
Abstract ATTED-II (https://atted. jp) is a gene coexpression database for nine plant species
based on publicly available RNAseq and microarray data. One of the challenges in …
based on publicly available RNAseq and microarray data. One of the challenges in …
Techniques for the analysis of protein-protein interactions in vivo
S Xing, N Wallmeroth, KW Berendzen… - Plant physiology, 2016 - academic.oup.com
Identifying key players and their interactions is fundamental for understanding biochemical
mechanisms at the molecular level. The ever-increasing number of alternative ways to …
mechanisms at the molecular level. The ever-increasing number of alternative ways to …
Charting plant gene functions in the multi-omics and single-cell era
T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …
a known function remains far from complete. With the advent of novel bulk and single-cell …
CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping
SA Wanamaker, RM Garza, A MacWilliams, JR Nery… - Nature …, 2017 - nature.com
Broad-scale protein–protein interaction mapping is a major challenge given the cost, time,
and sensitivity constraints of existing technologies. Here, we present a massively …
and sensitivity constraints of existing technologies. Here, we present a massively …
Crop biotechnology and the future of food
MA Steinwand, PC Ronald - Nature Food, 2020 - nature.com
The global population continues to rise, as does the likelihood of reduced yields of major
food crops due to the changing climate, thus making the development of genetically …
food crops due to the changing climate, thus making the development of genetically …
Multi‐omics network‐based functional annotation of unknown Arabidopsis genes
T Depuydt, K Vandepoele - The Plant Journal, 2021 - Wiley Online Library
Unraveling gene function is pivotal to understanding the signaling cascades that control
plant development and stress responses. As experimental profiling is costly and labor …
plant development and stress responses. As experimental profiling is costly and labor …
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators
Gene regulation is a dynamic process in which transcription factors (TFs) play an important
role in controlling spatiotemporal gene expression. To enhance our global understanding of …
role in controlling spatiotemporal gene expression. To enhance our global understanding of …
Genome-Wide Identification and Characterization of the WRKY Gene Family in Scutellaria baicalensis Georgi under Diverse Abiotic Stress
C Zhang, W Wang, D Wang, S Hu, Q Zhang… - International journal of …, 2022 - mdpi.com
The WRKY gene family is an important inducible regulatory factor in plants, which has been
extensively studied in many model plants. It has progressively become the focus of …
extensively studied in many model plants. It has progressively become the focus of …