Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

Displaced clines in an avian hybrid zone (Thamnophilidae: Rhegmatorhina) within an Amazonian interfluve

G Del-Rio, MA Rego, BM Whitney, F Schunck… - …, 2022 - academic.oup.com
Secondary contact between species often results in the formation of a hybrid zone, with the
eventual fates of the hybridizing species dependent on evolutionary and ecological forces …

[HTML][HTML] Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle

B Wielstra, E McCartney-Melstad, JW Arntzen… - Molecular Phylogenetics …, 2019 - Elsevier
Newts of the genus Triturus (marbled and crested newts) exhibit substantial variation in the
number of trunk vertebrae (NTV) and a higher NTV corresponds to a longer annual aquatic …

Is Niagara Falls a barrier to gene flow in riverine fishes? A test using genome‐wide SNP data from seven native species

NK Lujan, JT Weir, BP Noonan, NR Lovejoy… - Molecular …, 2020 - Wiley Online Library
Since the early Holocene, fish population genetics in the Laurentian Great Lakes have been
shaped by the dual influences of habitat structure and post‐glacial dispersal. Riverscape …

Pleistocene persistence and expansion in tarantulas on the Colorado Plateau and the effects of missing data on phylogeographical inferences from RADseq

MR Graham, CE Santibáñez‐López… - Molecular …, 2020 - Wiley Online Library
Montane species endemic to the “sky islands” of the North American southwest were
significantly impacted by changing climates during the Pleistocene. We combined …

Landscape genomic signatures indicate reduced gene flow and forest‐associated adaptive divergence in an endangered neotropical turtle

N Gallego‐García, G Forero‐Medina… - Molecular …, 2019 - Wiley Online Library
Human‐induced transformations of ecosystems usually result in fragmented populations
subject to increased extinction risk. Fragmentation is also often associated with novel …

Morphological polymorphism associated with alternative reproductive tactics in a plethodontid salamander

TW Pierson, J Deitloff, SK Sessions… - The American …, 2019 - journals.uchicago.edu
Understanding polymorphism is a central problem in evolution and ecology, and alternative
reproductive tactics (ARTs) provide compelling examples for studying the origin and …

Species limits and diversification of the Dendropsophus rubicundulus subgroup (Anura, Hylidae) in Neotropical savannas

ÍC Arantes, MM Vasconcellos, ML Smith… - Molecular Phylogenetics …, 2023 - Elsevier
Understanding the processes that generate and maintain biodiversity at and below the
species level is a central goal of evolutionary biology. Here we explore the spatial and …

Genomic data reveal local endemism in Southern California Rubber Boas (Serpentes: Boidae, Charina) and the critical need for enhanced conservation actions

J Grismer, P Scott, E Toffelmier, B Hinds… - Molecular Phylogenetics …, 2022 - Elsevier
The mountains of southern California represent unique, isolated ecosystems that support
distinct high-elevation habitats found nowhere else in the area. Analyses of several moisture …

Formation of a recent hybrid zone offers insight into the geographic puzzle and maintenance of species boundaries in musk turtles

PA Scott, TC Glenn, LJ Rissler - Molecular ecology, 2019 - Wiley Online Library
Speciation is the result of an accumulation of reproductive barriers between populations, but
pinpointing the factors involved is often difficult. However, hybrid zones can form when these …