Microbiome and human health: current understanding, engineering, and enabling technologies

N Aggarwal, S Kitano, GRY Puah, S Kittelmann… - Chemical …, 2022 - ACS Publications
The human microbiome is composed of a collection of dynamic microbial communities that
inhabit various anatomical locations in the body. Accordingly, the coevolution of the …

Potential of microbial endophytes to enhance the resistance to postharvest diseases of fruit and vegetables

X Huang, J Ren, P Li, S Feng, P Dong… - Journal of the Science …, 2021 - Wiley Online Library
Food loss of fruit and vegetables caused by postharvest diseases is a major issue
worldwide. The method used to prevent and control postharvest diseases is usually to use …

Investigating the dynamics of microbial consortia in spatially structured environments

S Gupta, TD Ross, MM Gomez, JL Grant… - Nature …, 2020 - nature.com
The spatial organization of microbial communities arises from a complex interplay of biotic
and abiotic interactions, and is a major determinant of ecosystem functions. Here we design …

Microbial interaction network inference in microfluidic droplets

RH Hsu, RL Clark, JW Tan, JC Ahn, S Gupta… - Cell systems, 2019 - cell.com
Microbial interactions are major drivers of microbial community dynamics and functions but
remain challenging to identify because of limitations in parallel culturing and absolute …

Integrating systems and synthetic biology to understand and engineer microbiomes

PA Leggieri, Y Liu, M Hayes, B Connors… - Annual Review of …, 2021 - annualreviews.org
Microbiomes are complex and ubiquitous networks of microorganisms whose seemingly
limitless chemical transformations could be harnessed to benefit agriculture, medicine, and …

The postharvest microbiome: The other half of sustainability

M Wisniewski, S Droby - Biological Control, 2019 - Elsevier
Biological control of postharvest diseases has been suggested as a viable alternative to
synthetic chemicals and has been the focus of considerable research worldwide for the last …

[HTML][HTML] The engineering of spatially linked microbial consortia–potential and perspectives

SB Said, R Tecon, B Borer, D Or - Current opinion in biotechnology, 2020 - Elsevier
Traditional biotechnological applications of microorganisms employ mono-cultivation or co-
cultivation in well-mixed vessels disregarding the potential of spatially organized cultures …

Calibrating spatiotemporal models of microbial communities to microscopy data: A review

A Yip, J Smith-Roberge, SH Khorasani… - PLOS Computational …, 2022 - journals.plos.org
Spatiotemporal models that account for heterogeneity within microbial communities rely on
single-cell data for calibration and validation. Such data, commonly collected via microscopy …

(Optochemical) control of synthetic microbial coculture interactions on a microcolony level

A Burmeister, Q Akhtar, L Hollmann… - ACS synthetic …, 2021 - ACS Publications
Synthetic microbial cocultures carry enormous potential for applied biotechnology and are
increasingly the subject of fundamental research. So far, most cocultures have been …

Exploring the roles of microbes in facilitating plant adaptation to climate change

EM Barnes, SG Tringe - Biochemical Journal, 2022 - portlandpress.com
Plants benefit from their close association with soil microbes which assist in their response
to abiotic and biotic stressors. Yet much of what we know about plant stress responses is …