[HTML][HTML] Single-cell sequencing of brain cell transcriptomes and epigenomes

EJ Armand, J Li, F Xie, C Luo, EA Mukamel - Neuron, 2021 - cell.com
Single-cell sequencing technologies, including transcriptomic and epigenomic assays, are
transforming our understanding of the cellular building blocks of neural circuits. By directly …

Patch-seq: Past, present, and future

M Lipovsek, C Bardy, CR Cadwell… - Journal of …, 2021 - Soc Neuroscience
Single-cell transcriptomic approaches are revolutionizing neuroscience. Integrating this
wealth of data with morphology and physiology, for the comprehensive study of neuronal …

[HTML][HTML] A multimodal cell census and atlas of the mammalian primary motor cortex

Principal manuscript editors, Analysis coordination… - Nature, 2021 - nature.com
Here we report the generation of a multimodal cell census and atlas of the mammalian
primary motor cortex as the initial product of the BRAIN Initiative Cell Census Network …

[HTML][HTML] An atlas of healthy and injured cell states and niches in the human kidney

BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira… - Nature, 2023 - nature.com
Understanding kidney disease relies on defining the complexity of cell types and states, their
associated molecular profiles and interactions within tissue neighbourhoods. Here we …

Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes

J Schwartzentruber, S Cooper, JZ Liu… - Nature …, 2021 - nature.com
Genome-wide association studies have discovered numerous genomic loci associated with
Alzheimer's disease (AD); yet the causal genes and variants are incompletely identified. We …

Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set

JM Kebschull, EB Richman, N Ringach, D Friedmann… - Science, 2020 - science.org
INTRODUCTION The brains of extant animals have evolved over hundreds of millions of
years from simple circuits. Cell types diversified, connections elaborated, and new brain …

[HTML][HTML] UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization

AR Kriebel, JD Welch - Nature communications, 2022 - nature.com
Single-cell genomic technologies provide an unprecedented opportunity to define molecular
cell types in a data-driven fashion, but present unique data integration challenges. Many …

[HTML][HTML] Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons

BE Kalmbach, RD Hodge, NL Jorstad, S Owen… - Neuron, 2021 - cell.com
In the neocortex, subcerebral axonal projections originate largely from layer 5 (L5)
extratelencephalic-projecting (ET) neurons. The unique morpho-electric properties of these …

Functional regulatory variants implicate distinct transcriptional networks in dementia

YA Cooper, N Teyssier, NM Dräger, Q Guo, JE Davis… - Science, 2022 - science.org
Predicting the function of noncoding variation is a major challenge in modern genetics. In
this study, we used massively parallel reporter assays to screen 5706 variants identified …

Optimized spiking neurons can classify images with high accuracy through temporal coding with two spikes

C Stöckl, W Maass - Nature Machine Intelligence, 2021 - nature.com
Spike-based neuromorphic hardware promises to reduce the energy consumption of image
classification and other deep-learning applications, particularly on mobile phones and other …