Myeloid cell-targeted therapies for solid tumours

S Goswami, S Anandhan, D Raychaudhuri… - Nature Reviews …, 2023 - nature.com
Myeloid cells are the most abundant immune components of the tumour microenvironment,
where they have a variety of functions, ranging from immunosuppressive to …

[HTML][HTML] Roles of macrophages in tumor development: a spatiotemporal perspective

M Bied, WW Ho, F Ginhoux, C Blériot - Cellular & Molecular …, 2023 - nature.com
Macrophages are critical regulators of tissue homeostasis but are also abundant in the
tumor microenvironment (TME). In both primary tumors and metastases, such tumor …

[HTML][HTML] Transcription factors interact with RNA to regulate genes

O Oksuz, JE Henninger, R Warneford-Thomson… - Molecular cell, 2023 - cell.com
Transcription factors (TFs) orchestrate the gene expression programs that define each cell's
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …

Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens

JA Morris, C Caragine, Z Daniloski, J Domingo, T Barry… - Science, 2023 - science.org
Most variants associated with complex traits and diseases identified by genome-wide
association studies (GWAS) map to noncoding regions of the genome with unknown effects …

Tissue homeostasis and inflammation

ML Meizlish, RA Franklin, X Zhou… - Annual review of …, 2021 - annualreviews.org
There is a growing interest in understanding tissue organization, homeostasis, and
inflammation. However, despite an abundance of data, the organizing principles of tissue …

Chemically defined cytokine-free expansion of human haematopoietic stem cells

M Sakurai, K Ishitsuka, R Ito, AC Wilkinson, T Kimura… - Nature, 2023 - nature.com
Haematopoietic stem cells (HSCs) are a rare cell type that reconstitute the entire blood and
immune systems after transplantation and can be used as a curative cell therapy for a variety …

Osteoimmunology: evolving concepts in bone–immune interactions in health and disease

M Tsukasaki, H Takayanagi - Nature Reviews Immunology, 2019 - nature.com
In terrestrial vertebrates, bone tissue constitutes the 'osteoimmune'system, which functions
as a locomotor organ and a mineral reservoir as well as a primary lymphoid organ where …

[HTML][HTML] MYC: a multipurpose oncogene with prognostic and therapeutic implications in blood malignancies

SE Ahmadi, S Rahimi, B Zarandi, R Chegeni… - Journal of hematology & …, 2021 - Springer
MYC oncogene is a transcription factor with a wide array of functions affecting cellular
activities such as cell cycle, apoptosis, DNA damage response, and hematopoiesis. Due to …

Characterization of cell fate probabilities in single-cell data with Palantir

M Setty, V Kiseliovas, J Levine, A Gayoso… - Nature …, 2019 - nature.com
Single-cell RNA sequencing studies of differentiating systems have raised fundamental
questions regarding the discrete versus continuous nature of both differentiation and cell …

[HTML][HTML] Single-cell RNA-seq denoising using a deep count autoencoder

G Eraslan, LM Simon, M Mircea, NS Mueller… - Nature …, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) has enabled researchers to study gene
expression at a cellular resolution. However, noise due to amplification and dropout may …