The physics of epigenetics
In higher organisms, all cells share the same genome, but every cell expresses only a
limited and specific set of genes that defines the cell type. During cell division, not only the …
limited and specific set of genes that defines the cell type. During cell division, not only the …
Predicting genome architecture: challenges and solutions
P Belokopytova, V Fishman - Frontiers in genetics, 2021 - frontiersin.org
Genome architecture plays a pivotal role in gene regulation. The use of high-throughput
methods for chromatin profiling and 3-D interaction mapping provide rich experimental data …
methods for chromatin profiling and 3-D interaction mapping provide rich experimental data …
Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin
K Hiragami-Hamada, S Soeroes, M Nikolov… - Nature …, 2016 - nature.com
Histone H3 trimethylation of lysine 9 (H3K9me3) and proteins of the heterochromatin protein
1 (HP1) family are hallmarks of heterochromatin, a state of compacted DNA essential for …
1 (HP1) family are hallmarks of heterochromatin, a state of compacted DNA essential for …
Nonequilibrium theory of epigenomic microphase separation in the cell nucleus
Understanding the spatial organization of the genome in the cell nucleus is one of the
current grand challenges in biophysics. Certain biochemical—or epigenetic—marks that are …
current grand challenges in biophysics. Certain biochemical—or epigenetic—marks that are …
[HTML][HTML] Beyond the nucleosome: nucleosome-protein interactions and higher order chromatin structure
VR Lobbia, MCT Sanchez, H van Ingen - Journal of molecular biology, 2021 - Elsevier
The regulation of chromatin biology ultimately depends on the manipulation of its smallest
subunit, the nucleosome. The proteins that bind and operate on the nucleosome do so …
subunit, the nucleosome. The proteins that bind and operate on the nucleosome do so …
Changing chromatin fiber conformation by nucleosome repositioning
O Müller, N Kepper, R Schöpflin, R Ettig, K Rippe… - Biophysical journal, 2014 - cell.com
Chromatin conformation is dynamic and heterogeneous with respect to nucleosome
positions, which can be changed by chromatin remodeling complexes in the cell. These …
positions, which can be changed by chromatin remodeling complexes in the cell. These …
DNA sequence-dependent formation of heterochromatin nanodomains
GJ Thorn, CT Clarkson, A Rademacher… - Nature …, 2022 - nature.com
The mammalian epigenome contains thousands of heterochromatin nanodomains (HNDs)
marked by di-and trimethylation of histone H3 at lysine 9 (H3K9me2/3), which have a typical …
marked by di-and trimethylation of histone H3 at lysine 9 (H3K9me2/3), which have a typical …
Heterochromatin assembly by interrupted Sir3 bridges across neighboring nucleosomes
R Behrouzi, C Lu, MA Currie, G Jih, N Iglesias… - Elife, 2016 - elifesciences.org
Heterochromatin is a conserved feature of eukaryotic chromosomes with central roles in
regulation of gene expression and maintenance of genome stability. Heterochromatin …
regulation of gene expression and maintenance of genome stability. Heterochromatin …
Nucleosome-free DNA regions differentially affect distant communication in chromatin
EV Nizovtseva, N Clauvelin, S Todolli… - Nucleic acids …, 2017 - academic.oup.com
Communication between distantly spaced genomic regions is one of the key features of
gene regulation in eukaryotes. Chromatin per se can stimulate efficient enhancer-promoter …
gene regulation in eukaryotes. Chromatin per se can stimulate efficient enhancer-promoter …
Biology and Physics of Heterochromatin-Like Domains/Complexes
PB Singh, SN Belyakin, PP Laktionov - Cells, 2020 - mdpi.com
The hallmarks of constitutive heterochromatin, HP1 and H3K9me2/3, assemble
heterochromatin-like domains/complexes outside canonical constitutively heterochromatic …
heterochromatin-like domains/complexes outside canonical constitutively heterochromatic …