Molecular engineering of insulin for recombinant expression in yeast

T Kjeldsen, AS Andersen, F Hubálek, E Johansson… - Trends in …, 2024 - cell.com
Since the first administration of insulin to a person with diabetes in 1922, scientific
contributions from academia and industry have improved insulin therapy and access. The …

A stabilized, monomeric, receptor binding domain elicits high-titer neutralizing antibodies against all SARS-CoV-2 variants of concern

S Ahmed, MS Khan, S Gayathri, R Singh… - Frontiers in …, 2021 - frontiersin.org
Saturation suppressor mutagenesis was used to generate thermostable mutants of the
SARS-CoV-2 spike receptor-binding domain (RBD). A triple mutant with an increase in …

Dual Enhancement of Thermostability and Activity of Xylanase through Computer-Aided Rational Design

M Lu, Z Li, H Zhuang, S Yang, X Zhao… - ACS Sustainable …, 2024 - ACS Publications
In the realm of enzyme engineering, the dual enhancement of thermostability and activity
remains a challenge. Herein, we employed a computer-aided approach integrating folding …

Mechanistic insights into global suppressors of protein folding defects

G Chattopadhyay, J Bhowmick, K Manjunath… - PLoS …, 2022 - journals.plos.org
Most amino acid substitutions in a protein either lead to partial loss-of-function or are near
neutral. Several studies have shown the existence of second-site mutations that can rescue …

Molecular Docking and Site-Directed Mutagenesis of GH49 Family Dextranase for the Preparation of High-Degree Polymerization Isomaltooligosaccharide

H Wang, Q Lin, M Liu, W Ding, N Weng, H Ni, J Lu… - Biomolecules, 2023 - mdpi.com
The high-degree polymerization of isomaltooligosaccharide (IMO) not only effectively
promotes the growth and reproduction of Bifidobacterium in the human body but also …

Improved prediction of stabilizing mutations in proteins by incorporation of mutational effects on ligand binding

S Ganesan, N Mittal, A Bhat, RS Adiga… - Proteins: Structure …, 2024 - Wiley Online Library
While many computational methods accurately predict destabilizing mutations, identifying
stabilizing mutations has remained a challenge, because of their relative rarity. We tested …

Utilization of low-stability variants in protein evolutionary engineering

M Wakisaka, S Tanaka, K Takano - International Journal of Biological …, 2024 - Elsevier
Evolutionary engineering involves repeated mutations and screening and is widely used to
modify protein functions. However, it is important to diversify evolutionary pathways to …

Combining cysteine scanning with chemical labeling to map protein-protein interactions and infer bound structure in an intrinsically disordered region

S Ahmed, G Chattopadhyay, K Manjunath… - Frontiers in Molecular …, 2022 - frontiersin.org
The Mycobacterium tuberculosis genome harbours nine toxin-antitoxin (TA) systems of the
mazEF family. These consist of two proteins, a toxin and an antitoxin, encoded in an operon …

[HTML][HTML] Protposer: The web server that readily proposes protein stabilizing mutations with high PPV

H García-Cebollada, A López, J Sancho - Computational and Structural …, 2022 - Elsevier
Protein stability is a requisite for most biotechnological and medical applications of proteins.
As natural proteins tend to suffer from a low conformational stability ex vivo, great efforts …

A novel homozygous missense variant in TBC1D31 in a consanguineous family with congenital anomalies of the kidney and urinary tract (CAKUT)

S Saygılı, C Koşukcu, T Baştuğ, ÖA Doğan… - Clinical …, 2023 - Wiley Online Library
Congenital anomalies of the kidney and urinary tract (CAKUT) is the leading cause of
chronic kidney disease in the first three decades of life. Until now, more than 180 monogenic …