A travel guide to Cytoscape plugins
Cytoscape is open-source software for integration, visualization and analysis of biological
networks. It can be extended through Cytoscape plugins, enabling a broad community of …
networks. It can be extended through Cytoscape plugins, enabling a broad community of …
[HTML][HTML] The ins and outs of algal metal transport
CE Blaby-Haas, SS Merchant - … et Biophysica Acta (BBA)-Molecular Cell …, 2012 - Elsevier
Metal transporters are a central component in the interaction of algae with their environment.
They represent the first line of defense to cellular perturbations in metal concentration, and …
They represent the first line of defense to cellular perturbations in metal concentration, and …
[HTML][HTML] clusterMaker: a multi-algorithm clustering plugin for Cytoscape
Background In the post-genomic era, the rapid increase in high-throughput data calls for
computational tools capable of integrating data of diverse types and facilitating recognition …
computational tools capable of integrating data of diverse types and facilitating recognition …
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues… - Nature protocols, 2012 - nature.com
Computational analysis and interactive visualization of biological networks and protein
structures are common tasks for gaining insight into biological processes. This protocol …
structures are common tasks for gaining insight into biological processes. This protocol …
Comparing the performance of biomedical clustering methods
C Wiwie, J Baumbach, R Röttger - Nature methods, 2015 - nature.com
Identifying groups of similar objects is a popular first step in biomedical data analysis, but it
is error-prone and impossible to perform manually. Many computational methods have been …
is error-prone and impossible to perform manually. Many computational methods have been …
[HTML][HTML] Cache domains that are homologous to, but different from PAS domains comprise the largest superfamily of extracellular sensors in prokaryotes
AA Upadhyay, AD Fleetwood, O Adebali… - PLoS computational …, 2016 - journals.plos.org
Cellular receptors usually contain a designated sensory domain that recognizes the signal.
Per/Arnt/Sim (PAS) domains are ubiquitous sensors in thousands of species ranging from …
Per/Arnt/Sim (PAS) domains are ubiquitous sensors in thousands of species ranging from …
The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii
When the sta6 (starch-null) strain of the green microalga Chlamydomonas reinhardtii is
nitrogen starved in acetate and then “boosted” after 2 days with additional acetate, the cells …
nitrogen starved in acetate and then “boosted” after 2 days with additional acetate, the cells …
Diversity of the metal-transporting P1B-type ATPases
AT Smith, KP Smith, AC Rosenzweig - JBIC Journal of Biological Inorganic …, 2014 - Springer
Abstract The P 1B-ATPases are integral membrane proteins that couple ATP hydrolysis to
metal cation transport. Widely distributed across all domains of life, these enzymes have …
metal cation transport. Widely distributed across all domains of life, these enzymes have …
[图书][B] Machine learning for health informatics
A Holzinger - 2016 - Springer
Abstract Machine Learning (ML) studies algorithms which can learn from data to gain
knowledge from experience and to make decisions and predictions. Health Informatics (HI) …
knowledge from experience and to make decisions and predictions. Health Informatics (HI) …
The CopC family: structural and bioinformatic insights into a diverse group of periplasmic copper binding proteins
The CopC proteins are periplasmic copper binding proteins believed to play a role in
bacterial copper homeostasis. Previous studies have focused on CopCs that are part of …
bacterial copper homeostasis. Previous studies have focused on CopCs that are part of …