Cytoscape is open-source software for integration, visualization and analysis of biological
networks. It can be extended through Cytoscape plugins, enabling a broad community of …

Metal transporters are a central component in the interaction of algae with their environment.
They represent the first line of defense to cellular perturbations in metal concentration, and …

Background In the post-genomic era, the rapid increase in high-throughput data calls for
computational tools capable of integrating data of diverse types and facilitating recognition …

Computational analysis and interactive visualization of biological networks and protein
structures are common tasks for gaining insight into biological processes. This protocol …

Identifying groups of similar objects is a popular first step in biomedical data analysis, but it
is error-prone and impossible to perform manually. Many computational methods have been …

Cellular receptors usually contain a designated sensory domain that recognizes the signal.
Per/Arnt/Sim (PAS) domains are ubiquitous sensors in thousands of species ranging from …

When the sta6 (starch-null) strain of the green microalga Chlamydomonas reinhardtii is
nitrogen starved in acetate and then “boosted” after 2 days with additional acetate, the cells …

Abstract The P 1B-ATPases are integral membrane proteins that couple ATP hydrolysis to
metal cation transport. Widely distributed across all domains of life, these enzymes have …

Abstract Machine Learning (ML) studies algorithms which can learn from data to gain
knowledge from experience and to make decisions and predictions. Health Informatics (HI) …

The CopC proteins are periplasmic copper binding proteins believed to play a role in
bacterial copper homeostasis. Previous studies have focused on CopCs that are part of …