[HTML][HTML] Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics

X Zhou, RJL Willems, AW Friedrich… - … Resistance & Infection …, 2020 - Springer
Early in its evolution, Enterococcus faecium acquired traits that allowed it to become a
successful nosocomial pathogen. E. faecium inherent tenacity to build resistance to …

[HTML][HTML] Global emergence and dissemination of enterococci as nosocomial pathogens: attack of the clones?

AM Guzman Prieto, W van Schaik… - Frontiers in …, 2016 - frontiersin.org
Enterococci are Gram-positive bacteria that are found in plants, soil and as commensals of
the gastrointestinal tract of humans, mammals, and insects. Despite their commensal nature …

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

M Hunt, AE Mather, L Sánchez-Busó… - Microbial …, 2017 - microbiologyresearch.org
Antimicrobial resistance (AMR) is one of the major threats to human and animal health
worldwide, yet few high-throughput tools exist to analyse and predict the resistance of a …

[HTML][HTML] SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

M Inouye, H Dashnow, LA Raven, MB Schultz… - Genome medicine, 2014 - Springer
Rapid molecular typing of bacterial pathogens is critical for public health epidemiology,
surveillance and infection control, yet routine use of whole genome sequencing (WGS) for …

Antimicrobial Resistance in Enterococcus spp. of animal origin

C Torres, CA Alonso, L Ruiz‐Ripa… - … in bacteria from …, 2018 - Wiley Online Library
Enterococcus species are natural inhabitants of the intestinal tract in humans and animals,
and due to their ubiquity in human and animal feces and their persistence in the …

Whole genome sequencing in clinical and public health microbiology

JC Kwong, N McCallum, V Sintchenko, BP Howden - Pathology, 2015 - Elsevier
Genomics and whole genome sequencing (WGS) have the capacity to greatly enhance
knowledge and understanding of infectious diseases and clinical microbiology. The growth …

The human gut resistome

W Van Schaik - … Transactions of the Royal Society B …, 2015 - royalsocietypublishing.org
In recent decades, the emergence and spread of antibiotic resistance among bacterial
pathogens has become a major threat to public health. Bacteria can acquire antibiotic …

Evolution of virulence in Enterococcus faecium, a hospital-adapted opportunistic pathogen

W Gao, BP Howden, TP Stinear - Current opinion in microbiology, 2018 - Elsevier
Highlights•Enterococcus faecium is gaining prominence as a nosocomial
pathogen.•Genome expansion is a distinguishing feature of health-care associated E …

Genome-scale rates of evolutionary change in bacteria

S Duchêne, KE Holt, FX Weill, S Le Hello… - Microbial …, 2016 - microbiologyresearch.org
Estimating the rates at which bacterial genomes evolve is critical to understanding major
evolutionary and ecological processes such as disease emergence, long-term host …

Enterococci and their interactions with the intestinal microbiome

K Dubin, EG Pamer - Microbiology spectrum, 2017 - Am Soc Microbiol
The Enterococcus genus comprises over 50 species that live as commensal bacteria in the
gastrointestinal (GI) tracts of insects, birds, reptiles, and mammals. Named “entero” to …