The technological landscape and applications of single-cell multi-omics

A Baysoy, Z Bai, R Satija, R Fan - Nature Reviews Molecular Cell …, 2023 - nature.com
Single-cell multi-omics technologies and methods characterize cell states and activities by
simultaneously integrating various single-modality omics methods that profile the …

Targeting MAPK signaling in cancer: mechanisms of drug resistance and sensitivity

S Lee, J Rauch, W Kolch - International journal of molecular sciences, 2020 - mdpi.com
Mitogen-activated protein kinase (MAPK) pathways represent ubiquitous signal transduction
pathways that regulate all aspects of life and are frequently altered in disease. Here, we …

Long noncoding RNA in cancer: wiring signaling circuitry

C Lin, L Yang - Trends in cell biology, 2018 - cell.com
Long noncoding RNAs (lncRNAs), which are encoded by a vast less explored region of the
human genome, may hold missing drivers of cancer and have gained attention recently as a …

lncRNA epigenetic landscape analysis identifies EPIC1 as an oncogenic lncRNA that interacts with MYC and promotes cell-cycle progression in cancer

Z Wang, B Yang, M Zhang, W Guo, Z Wu, Y Wang, L Jia… - Cancer cell, 2018 - cell.com
We characterized the epigenetic landscape of genes encoding long noncoding RNAs
(lncRNAs) across 6,475 tumors and 455 cancer cell lines. In stark contrast to the CpG island …

Potential of long non‐coding RNAs in cancer patients: from biomarkers to therapeutic targets

S Chandra Gupta… - International journal of …, 2017 - Wiley Online Library
Because of high specificity and easy detection in the tissues, serum, plasma, urine and
saliva, interest in exploring the potential of long non‐coding RNAs (lncRNAs) in cancer …

Risk SNP-mediated promoter-enhancer switching drives prostate cancer through lncRNA PCAT19

JT Hua, M Ahmed, H Guo, Y Zhang, S Chen, F Soares… - Cell, 2018 - cell.com
The prostate cancer (PCa) risk-associated SNP rs11672691 is positively associated with
aggressive disease at diagnosis. We showed that rs11672691 maps to the promoter of a …

ONECUT2 is a driver of neuroendocrine prostate cancer

H Guo, X Ci, M Ahmed, JT Hua, F Soares, D Lin… - Nature …, 2019 - nature.com
Neuroendocrine prostate cancer (NEPC), a lethal form of the disease, is characterized by
loss of androgen receptor (AR) signaling during neuroendocrine transdifferentiation, which …

Transsulfuration activity can support cell growth upon extracellular cysteine limitation

J Zhu, M Berisa, S Schwörer, W Qin, JR Cross… - Cell metabolism, 2019 - cell.com
Cysteine acts both as a building unit for protein translation and as the limiting substrate for
glutathione synthesis to support the cellular antioxidant system. In addition to transporter …

The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases

AJ Alsheikh, S Wollenhaupt, EA King, J Reeb… - BMC medical …, 2022 - Springer
Background The remarkable growth of genome-wide association studies (GWAS) has
created a critical need to experimentally validate the disease-associated variants, 90% of …

LncRNA PCAT1 activates AKT and NF-κB signaling in castration-resistant prostate cancer by regulating the PHLPP/FKBP51/IKKα complex

Z Shang, J Yu, L Sun, J Tian, S Zhu… - Nucleic acids …, 2019 - academic.oup.com
In PTEN-deficient prostate cancers, AKT signaling may be activated upon suppression of
androgen receptor signaling. Activation of AKT as well as NF-κB signaling involves a key …