Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Green giant—a tiny chloroplast genome with mighty power to produce high‐value proteins: history and phylogeny

H Daniell, S Jin, XG Zhu… - Plant biotechnology …, 2021 - Wiley Online Library
Free‐living cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

JB Yang, M Tang, HT Li, ZR Zhang, DZ Li - BMC evolutionary biology, 2013 - Springer
Background Cymbidium orchids, including some 50 species, are the famous flowers, and
they possess high commercial value in the floricultural industry. Furthermore, the values of …

Comparative analysis of the complete chloroplast genome among Prunus mume, P. armeniaca, and P. salicina

S Xue, T Shi, W Luo, X Ni, S Iqbal, Z Ni… - Horticulture …, 2019 - academic.oup.com
Abstract Prunus mume Sieb. et Zucc., P. armeniaca L., and P. salicina L. are economically
important fruit trees in temperate regions. These species are taxonomically perplexing …

De novo assembly of a Chinese soybean genome

Y Shen, J Liu, H Geng, J Zhang, Y Liu, H Zhang… - Science China Life …, 2018 - Springer
Soybean was domesticated in China and has become one of the most important oilseed
crops. Due to bottlenecks in their introduction and dissemination, soybeans from different …

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

RJ Wang, CL Cheng, CC Chang, CL Wu, TM Su… - BMC evolutionary …, 2008 - Springer
Background Various expansions or contractions of inverted repeats (IRs) in chloroplast
genomes led to fluxes in the IR-LSC (large single copy) junctions. Previous studies revealed …

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

LA Raubeson, R Peery, TW Chumley, C Dziubek… - BMC genomics, 2007 - Springer
Background The number of completely sequenced plastid genomes available is growing
rapidly. This array of sequences presents new opportunities to perform comparative …

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

M Yang, X Zhang, G Liu, Y Yin, K Chen, Q Yun, D Zhao… - PloS one, 2010 - journals.plos.org
Background Date palm (Phoenix dactylifera L.), a member of Arecaceae family, is one of the
three major economically important woody palms—the two other palms being oil palm and …

An update on chloroplast genomes

V Ravi, JP Khurana, AK Tyagi, P Khurana - Plant systematics and …, 2008 - Springer
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …

GenomeVx: simple web-based creation of editable circular chromosome maps

GC Conant, KH Wolfe - Bioinformatics, 2008 - academic.oup.com
We describe GenomeVx, a web-based tool for making editable, publication-quality, maps of
mitochondrial and chloroplast genomes and of large plasmids. These maps show the …