Escherichia coli as a host for metabolic engineering
Over the past century, Escherichia coli has become one of the best studied organisms on
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
Synthetic biology to access and expand nature's chemical diversity
Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of
complex molecules with diverse applications, from medicine to agriculture and materials …
complex molecules with diverse applications, from medicine to agriculture and materials …
Synthetic genetic circuits as a means of reprogramming plant roots
The shape of a plant's root system influences its ability to reach essential nutrients in the soil
and to acquire water during drought. Progress in engineering plant roots to optimize water …
and to acquire water during drought. Progress in engineering plant roots to optimize water …
In situ targeted base editing of bacteria in the mouse gut
AK Brödel, LH Charpenay, M Galtier, FJ Fuche… - Nature, 2024 - nature.com
Microbiome research is now demonstrating a growing number of bacterial strains and genes
that affect our health. Although CRISPR-derived tools have shown great success in editing …
that affect our health. Although CRISPR-derived tools have shown great success in editing …
Genetic circuit design automation
AAK Nielsen, BS Der, J Shin, P Vaidyanathan… - Science, 2016 - science.org
INTRODUCTION Cells respond to their environment, make decisions, build structures, and
coordinate tasks. Underlying these processes are computational operations performed by …
coordinate tasks. Underlying these processes are computational operations performed by …
Large-scale de novo DNA synthesis: technologies and applications
For over 60 years, the synthetic production of new DNA sequences has helped researchers
understand and engineer biology. Here we summarize methods and caveats for the de novo …
understand and engineer biology. Here we summarize methods and caveats for the de novo …
Principles of genetic circuit design
JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …
expression in response to specific signals. Engineers seek to harness this capability to …
Genetic circuit design automation for yeast
Cells can be programmed to monitor and react to their environment using genetic circuits.
Design automation software maps a desired circuit function to a DNA sequence, a process …
Design automation software maps a desired circuit function to a DNA sequence, a process …
Customizing cellular signal processing by synthetic multi-level regulatory circuits
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …
systems must be customized to meet practical demands. Towards this mission, novel …
Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria
Ultrasound allows imaging at a much greater depth than optical methods, but existing
genetically encoded acoustic reporters for in vivo cellular imaging have been limited by poor …
genetically encoded acoustic reporters for in vivo cellular imaging have been limited by poor …