Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

How can natural language processing help model informed drug development?: a review

R Bhatnagar, S Sardar, M Beheshti, JT Podichetty - JAMIA open, 2022 - academic.oup.com
Objective To summarize applications of natural language processing (NLP) in model
informed drug development (MIDD) and identify potential areas of improvement. Materials …

Building a knowledge graph to enable precision medicine

P Chandak, K Huang, M Zitnik - Scientific Data, 2023 - nature.com
Developing personalized diagnostic strategies and targeted treatments requires a deep
understanding of disease biology and the ability to dissect the relationship between …

KG-Predict: A knowledge graph computational framework for drug repurposing

Z Gao, P Ding, R Xu - Journal of biomedical informatics, 2022 - Elsevier
The emergence of large-scale phenotypic, genetic, and other multi-model biochemical data
has offered unprecedented opportunities for drug discovery including drug repurposing …

[HTML][HTML] The DDI corpus: An annotated corpus with pharmacological substances and drug–drug interactions

M Herrero-Zazo, I Segura-Bedmar, P Martínez… - Journal of biomedical …, 2013 - Elsevier
The management of drug–drug interactions (DDIs) is a critical issue resulting from the
overwhelming amount of information available on them. Natural Language Processing …

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

À Bravo, J Piñero, N Queralt-Rosinach, M Rautschka… - BMC …, 2015 - Springer
Background Current biomedical research needs to leverage and exploit the large amount of
information reported in scientific publications. Automated text mining approaches, in …

Big, deep, and smart data in scanning probe microscopy

SV Kalinin, E Strelcov, A Belianinov, S Somnath… - 2016 - ACS Publications
Scanning probe microscopy (SPM) techniques have opened the door to nanoscience and
nanotechnology by enabling imaging and manipulation of the structure and functionality of …

Repurposing ketamine to treat cocaine use disorder: Integration of artificial intelligence‐based prediction, expert evaluation, clinical corroboration and mechanism of …

Z Gao, TJ Winhusen, M Gorenflo, UE Ghitza… - …, 2023 - Wiley Online Library
Background and aims Cocaine use disorder (CUD) is a significant public health issue for
which there is no Food and Drug Administration (FDA) approved medication. Drug …

Predicting drug-disease associations and their therapeutic function based on the drug-disease association bipartite network

W Zhang, X Yue, F Huang, R Liu, Y Chen, C Ruan - Methods, 2018 - Elsevier
Drug-disease associations provide important information for drug discovery and drug
repositioning. Drug-disease associations can induce different effects, and the therapeutic …

Literature-based discovery of new candidates for drug repurposing

HT Yang, JH Ju, YT Wong, I Shmulevich… - Briefings in …, 2017 - academic.oup.com
Drug development is an expensive and time-consuming process; these could be reduced if
the existing resources could be used to identify candidates for drug repurposing. This study …