Unsupervised Machine Learning in the Analysis of Nonadiabatic Molecular Dynamics Simulation

Y Zhu, J Peng, C Xu, Z Lan - The Journal of Physical Chemistry …, 2024 - ACS Publications
The all-atomic full-dimensional-level simulations of nonadiabatic molecular dynamics
(NAMD) in large realistic systems has received high research interest in recent years …

Portable models for entropy effects on kinetic selectivity

DJ Tantillo - Journal of the American Chemical Society, 2022 - ACS Publications
Differences in entropies of competing transition states can direct kinetic selectivity.
Understanding and modeling such entropy differences at the molecular level is complicated …

C–H Insertion in dirhodium tetracarboxylate-catalyzed reactions despite dynamical tendencies toward fragmentation: implications for reaction efficiency and catalyst …

W Guo, SR Hare, SS Chen, CM Saunders… - Journal of the …, 2022 - ACS Publications
Rh-catalyzed C–H insertion reactions to form β-lactones suffer from post-transition state
bifurcations, with the same transition states leading to ketones and ketenes via …

Uncovering an oxide ion substitution for the OH−+ CH 3 F reaction

DA Tasi, G Czakó - Chemical Science, 2021 - pubs.rsc.org
Theoretical investigations on chemical reactions allow us to understand the dynamics of the
possible pathways and identify new unexpected routes. Here, we develop a global …

Visualization of reaction route map and dynamical trajectory in reduced dimension

T Tsutsumi, Y Ono, T Taketsugu - Chemical communications, 2021 - pubs.rsc.org
In the quantum chemical approach, chemical reaction mechanisms are investigated based
on a potential energy surface (PES). Automated reaction path search methods enable us to …

A 21st Century View of Allowed and Forbidden Electrocyclic Reactions

Q Zhou, G Kukier, I Gordiy, R Hoffmann… - The Journal of …, 2023 - ACS Publications
In 1965, Woodward and Hoffmann proposed a theory to predict the stereochemistry of
electrocyclic reactions, which, after expansion and generalization, became known as the …

Going Beyond Woodward and Hoffmann's Electrocyclizations and Cycloadditions: Sigmatropic Rearrangements

JI Seeman - The Chemical Record, 2024 - Wiley Online Library
Abstract On June 1, 1965, RB Woodward and Roald Hoffmann published their third
communication in the Journal of the American Chemical Society in which they applied …

Interpolation methods for molecular potential energy surface construction

HY Kwon, Z Morrow, CT Kelley… - The Journal of Physical …, 2021 - ACS Publications
The concept of a potential energy surface (PES) is one of the most important concepts in
modern chemistry. A PES represents the relationship between the chemical system's energy …

Challenges for kinetics predictions via neural network potentials: a Wilkinson's catalyst case

R Staub, P Gantzer, Y Harabuchi, S Maeda, A Varnek - Molecules, 2023 - mdpi.com
Ab initio kinetic studies are important to understand and design novel chemical reactions.
While the Artificial Force Induced Reaction (AFIR) method provides a convenient and …

Vibrational mode-specificity in the dynamics of the OH−+ CH3I multi-channel reaction

DA Tasi, G Czakó - The Journal of Chemical Physics, 2024 - pubs.aip.org
We report a comprehensive characterization of the vibrational mode-specific dynamics of the
OH−+ CH 3 I reaction. Quasi-classical trajectory simulations are performed at four different …