Reconstructing organisms in silico: genome-scale models and their emerging applications
X Fang, CJ Lloyd, BO Palsson - Nature Reviews Microbiology, 2020 - nature.com
Escherichia coli is considered to be the best-known microorganism given the large number
of published studies detailing its genes, its genome and the biochemical functions of its …
of published studies detailing its genes, its genome and the biochemical functions of its …
Oxidative stress and antioxidants in age-related macular degeneration
Oxidative stress plays a crucial role in aging-related eye diseases, including age-related
macular degeneration (AMD), cataracts, and glaucoma. With age, antioxidant reparative …
macular degeneration (AMD), cataracts, and glaucoma. With age, antioxidant reparative …
Genome-scale metabolic modeling enables in-depth understanding of big data
Genome-scale metabolic models (GEMs) enable the mathematical simulation of the
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
Effects of electrolysed water combined with ultrasound on inactivation kinetics and metabolite profiles of Escherichia coli biofilms on food contact surface
This study aimed to better understand the overall metabolic responses of Escherichia coli
biofilms to the combined stresses of ultrasound and low concentration acidic electrolysed …
biofilms to the combined stresses of ultrasound and low concentration acidic electrolysed …
Crossroads in the evolution of plant specialized metabolism
TP Rieseberg, A Dadras, JMR Fürst-Jansen… - Seminars in Cell & …, 2023 - Elsevier
The monophyletic group of embryophytes (land plants) stands out among photosynthetic
eukaryotes: they are the sole constituents of the macroscopic flora on land. In their entirety …
eukaryotes: they are the sole constituents of the macroscopic flora on land. In their entirety …
Neurotoxicity of MDMA: main effects and mechanisms
G Costa, K Gołembiowska - Experimental neurology, 2022 - Elsevier
Preclinical and clinical studies indicate that 3, 4-methylenedioxymethamphetamine
(MDMA;'ecstasy'), in addition to having abuse potential, may elicit acute and persistent …
(MDMA;'ecstasy'), in addition to having abuse potential, may elicit acute and persistent …
Microbiome re-assembly boosts anaerobic digestion under volatile fatty acid inhibition: focusing on reactive oxygen species metabolism
M Yan, Z Hu, Z Duan, Y Sun, T Dong, X Sun, F Zhen… - Water Research, 2023 - Elsevier
The accumulation of volatile fatty acids (VFAs) in anaerobic digestion (AD) systems resulting
from food waste overload poses a risk of system collapse. However, limited understanding …
from food waste overload poses a risk of system collapse. However, limited understanding …
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning
Independent component analysis (ICA) of bacterial transcriptomes has emerged as a
powerful tool for obtaining co-regulated, independently-modulated gene sets (iModulons) …
powerful tool for obtaining co-regulated, independently-modulated gene sets (iModulons) …
Effects of BPA, BPS, and BPF on oxidative stress and antioxidant enzyme expression in bovine oocytes and spermatozoa
M Nguyen, R Sabry, OS Davis, LA Favetta - Genes, 2022 - mdpi.com
Bisphenol A (BPA) and its analogs, bisphenol S (BPS) and bisphenol F (BPF), might impact
fertility by altering oxidative stress pathways. Here, we hypothesize that bisphenols-induced …
fertility by altering oxidative stress pathways. Here, we hypothesize that bisphenols-induced …
[HTML][HTML] Strategies to increase tolerance and robustness of industrial microorganisms
The development of a cost-competitive bioprocess requires that the cell factory converts the
feedstock into the product of interest at high rates and yields. However, microbial cell …
feedstock into the product of interest at high rates and yields. However, microbial cell …