What is the “modified” CTAB protocol? Characterizing modifications to the CTAB DNA extraction protocol

JJ Schenk, LE Becklund, SJ Carey… - Applications in Plant …, 2023 - Wiley Online Library
Cetyltrimethylammonium bromide (CTAB)–based methods are widely used to isolate DNA
from plant tissues, but the unique chemical composition of secondary metabolites among …

Leveraging the power of long reads for targeted sequencing

SV Iyer, S Goodwin, WR McCombie - Genome Research, 2024 - genome.cshlp.org
Long-read sequencing technologies have improved the contiguity and, as a result, the
quality of genome assemblies by generating reads long enough to span and resolve …

A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022 - academic.oup.com
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …

Taming the beast: a revised classification of Cortinariaceae based on genomic data

K Liimatainen, JT Kim, L Pokorny, PM Kirk, B Dentinger… - Fungal Diversity, 2022 - Springer
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …

A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set

O Maurin, A Anest, S Bellot, E Biffin… - American Journal of …, 2021 - Wiley Online Library
Premise To further advance the understanding of the species‐rich, economically and
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

WJ Baker, S Dodsworth, F Forest, SW Graham… - 2021 - ttu-ir.tdl.org
The unveiling of the angiosperm (flowering plant) tree of life over the past three decades has
been one of the great success stories of modern plant biology. Flowering plants underpin …

Using target sequence capture to improve the phylogenetic resolution of a rapid radiation in New Zealand Veronica

AE Thomas, J Igea, HM Meudt… - American journal of …, 2021 - Wiley Online Library
PREMISE Recent, rapid radiations present a challenge for phylogenetic reconstruction. Fast
successive speciation events typically lead to low sequence divergence and poorly resolved …

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

G Yardeni, J Viruel, M Paris, J Hess… - Molecular Ecology …, 2022 - Wiley Online Library
Target capture has emerged as an important tool for phylogenetics and population genetics
in nonmodel taxa. Whereas developing taxon‐specific capture probes requires sustained …

Target sequence capture in orchids: Developing a kit to sequence hundreds of single‐copy loci

LA Eserman, SK Thomas, EED Coffey… - Applications in Plant …, 2021 - Wiley Online Library
Premise Understanding relationships among orchid species and populations is of critical
importance for orchid conservation. Target sequence capture has become a standard …

Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set

SK Thomas, X Liu, ZY Du, Y Dong… - American Journal of …, 2021 - Wiley Online Library
Premise Cornales is an order of flowering plants containing ecologically and horticulturally
important families, including Cornaceae (dogwoods) and Hydrangeaceae (hydrangeas) …