Pervasive transcription: a controlled risk

T Villa, O Porrua - The FEBS Journal, 2023 - Wiley Online Library
Transcriptome‐wide interrogation of eukaryotic genomes has unveiled the pervasive nature
of RNA polymerase II transcription. Virtually, any DNA region with an accessible chromatin …

Genetic screen for suppression of transcriptional interference identifies a gain-of-function mutation in Pol2 termination factor Seb1

B Schwer, A Garg, A Jacewicz… - Proceedings of the …, 2021 - National Acad Sciences
The system of long noncoding RNA (lncRNA)–mediated transcriptional interference that
represses fission yeast phosphate homoeostasis gene pho1 provides a sensitive readout of …

Removing quote marks from the RNA polymerase II CTD 'code'

G Dieci - Biosystems, 2021 - Elsevier
In eukaryotes, RNA polymerase II (Pol II) is responsible for the synthesis of all mRNAs and
myriads of short and long untranslated RNAs, whose fabrication involves close …

The Nrd1–Nab3–Sen1 transcription termination complex from a structural perspective

B Chaves-Arquero… - Biochemical Society …, 2023 - portlandpress.com
A substantial part of living cells activity involves transcription regulation. The RNA
polymerases responsible for this job need to know 'where/when'to start and stop in the …

[HTML][HTML] Exploring the functionality and conservation of Alba proteins in Trypanosoma cruzi: A focus on biological diversity and RNA binding ability

JM Matiz-González, D Pardo-Rodriguez… - International Journal of …, 2024 - Elsevier
Trypanosoma cruzi is the causative agent of Chagas disease, as well as a trypanosomatid
parasite with a complex biological cycle that requires precise mechanisms for regulating …

Identification of three sequence motifs in the transcription termination factor Sen1 that mediate direct interactions with Nrd1

Y Zhang, Y Chun, S Buratowski, L Tong - Structure, 2019 - cell.com
Summary The Nrd1-Nab3-Sen1 (NNS) complex carries out the transcription termination of
non-coding RNAs (ncRNAs) by RNA polymerase II (Pol II) in yeast, although the detailed …

Structural basis of Nrd1–Nab3 heterodimerization

B Chaves-Arquero… - Life science …, 2022 - life-science-alliance.org
Heterodimerization of RNA binding proteins Nrd1 and Nab3 is essential to communicate the
RNA recognition in the nascent transcript with the Nrd1 recognition of the Ser5 …

A Genome-Wide Screen Reveals That Endocytic Genes Are Important for Pma1p Asymmetry during Cell Division in Saccharomyces cerevisiae

SY Yoon, E Jang, N Ko, M Kim, SY Kim… - International Journal of …, 2022 - mdpi.com
An asymmetry in cytosolic pH between mother and daughter cells was reported to underlie
cellular aging in the budding yeast Saccharomyces cerevisiae; however, the underlying …

[图书][B] Parallel genetics of gene regulatory sequences in Caenorhabditis elegans

J Froehlich - 2022 - search.proquest.com
How regulatory sequences control gene expression is fundamental for explaining
phenotypes in health and disease. The function of regulatory sequences must ultimately be …

[图书][B] Investigating the Function of the Yeast Rna Binding Protein Hrp1 in Rna Polymerase Ii Transcription Termination

EC Goguen - 2023 - search.proquest.com
Proteins that bind the nascent transcript exiting RNA polymerase II (RNAP II) can regulate
transcription elongation. The essential Saccharomyces cerevisiae hnRNP protein Hrp1 is …