Analysing microbial community composition through amplicon sequencing: from sampling to hypothesis testing
LW Hugerth, AF Andersson - Frontiers in microbiology, 2017 - frontiersin.org
Microbial ecology as a scientific field is fundamentally driven by technological advance. The
past decade's revolution in DNA sequencing cost and throughput has made it possible for …
past decade's revolution in DNA sequencing cost and throughput has made it possible for …
Microbial indicators of fecal pollution: recent progress and challenges in assessing water quality
DA Holcomb, JR Stewart - Current environmental health reports, 2020 - Springer
Abstract Purpose of Review Fecal contamination of water is a major public health concern.
This review summarizes recent developments and advancements in water quality indicators …
This review summarizes recent developments and advancements in water quality indicators …
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
V Sevim, J Lee, R Egan, A Clum, H Hundley, J Lee… - Scientific data, 2019 - nature.com
Metagenomic sequence data from defined mock communities is crucial for the assessment
of sequencing platform performance and downstream analyses, including assembly, binning …
of sequencing platform performance and downstream analyses, including assembly, binning …
[HTML][HTML] Metagenomic water quality monitoring with a portable laboratory
We describe the technical feasibility of metagenomic water quality analysis using only
portable equipment, for example mini-vacuum pumps and filtration units, mini-centrifuges …
portable equipment, for example mini-vacuum pumps and filtration units, mini-centrifuges …
Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?
LJ Kerkhof - FEMS microbiology ecology, 2021 - academic.oup.com
This minireview will discuss the improvements in Oxford Nanopore (Oxford; sequencing
technology that make the MinION a viable platform for microbial ecology studies. Specific …
technology that make the MinION a viable platform for microbial ecology studies. Specific …
Rapid detection methods for bacterial pathogens in ambient waters at the point of sample collection: a brief review
The world is currently facing a serious health burden of waterborne diseases, including
diarrhea, gastrointestinal diseases, and systemic illnesses. The control of these infectious …
diarrhea, gastrointestinal diseases, and systemic illnesses. The control of these infectious …
[HTML][HTML] Environmental DNA clarifies impacts of combined sewer overflows on the bacteriology of an urban river and resulting risks to public health
There is no reference of microbiological water quality in the European Union's Water
Framework Directive, adapted into English law, and consequently microbial water quality is …
Framework Directive, adapted into English law, and consequently microbial water quality is …
Decay of four enteric pathogens and implications to wastewater-based epidemiology: Effects of temperature and wastewater dilutions
Measurement of pathogens in raw wastewater from a population within certain sewer
catchments can provide quantitative information on public health status within the sampled …
catchments can provide quantitative information on public health status within the sampled …
A comparative assessment of conventional and molecular methods, including MinION nanopore sequencing, for surveying water quality
Nucleic acid based techniques, such as quantitative PCR (qPCR) and next generation
sequencing (NGS), provide new insights into microbial water quality, but considerable …
sequencing (NGS), provide new insights into microbial water quality, but considerable …
MinION Nanopore sequencing accelerates progress towards ubiquitous genetics in water research
In 2014, Oxford Nanopore Technologies (ONT) introduced an affordable and portable
sequencer called MinION. We reviewed emerging applications in water research and …
sequencer called MinION. We reviewed emerging applications in water research and …