ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Background Evolutionary histories can be discordant across the genome, and such
discordances need to be considered in reconstructing the species phylogeny. ASTRAL is …
discordances need to be considered in reconstructing the species phylogeny. ASTRAL is …
Revisiting metazoan phylogeny with genomic sampling of all phyla
Proper biological interpretation of a phylogeny can sometimes hinge on the placement of
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …
[HTML][HTML] EvoRegen in animals: Time to uncover deep conservation or convergence of adult stem cell evolution and regenerative processes
AG Lai, AA Aboobaker - Developmental biology, 2018 - Elsevier
How do animals regenerate specialised tissues or their entire body after a traumatic injury,
how has this ability evolved and what are the genetic and cellular components underpinning …
how has this ability evolved and what are the genetic and cellular components underpinning …
Mapping single-cell atlases throughout Metazoa unravels cell type evolution
Comparing single-cell transcriptomic atlases from diverse organisms can elucidate the
origins of cellular diversity and assist the annotation of new cell atlases. Yet, comparison …
origins of cellular diversity and assist the annotation of new cell atlases. Yet, comparison …
Fast coalescent-based computation of local branch support from quartet frequencies
Species tree reconstruction is complicated by effects of incomplete lineage sorting,
commonly modeled by the multi-species coalescent model (MSC). While there has been …
commonly modeled by the multi-species coalescent model (MSC). While there has been …
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees
Z He, H Zhang, S Gao, MJ Lercher… - Nucleic acids …, 2016 - academic.oup.com
Evolview is an online visualization and management tool for customized and annotated
phylogenetic trees. It allows users to visualize phylogenetic trees in various formats …
phylogenetic trees. It allows users to visualize phylogenetic trees in various formats …
Embracing the comparative approach: how robust phylogenies and broader developmental sampling impacts the understanding of nervous system evolution
Molecular biology has provided a rich dataset to develop hypotheses of nervous system
evolution. The startling patterning similarities between distantly related animals during the …
evolution. The startling patterning similarities between distantly related animals during the …
ASTRAL-III: increased scalability and impacts of contracting low support branches
Discordances between species trees and gene trees can complicate phylogenetics
reconstruction. ASTRAL is a leading method for inferring species trees given gene trees …
reconstruction. ASTRAL is a leading method for inferring species trees given gene trees …
Spiralian phylogeny informs the evolution of microscopic lineages
Despite rapid advances in the study of metazoan evolutionary history [1], phylogenomic
analyses have so far neglected a number of microscopic lineages that possess a unique …
analyses have so far neglected a number of microscopic lineages that possess a unique …
Phylogenomics of Lophotrochozoa with consideration of systematic error
Phylogenomic studies have improved understanding of deep metazoan phylogeny and
show promise for resolving incongruences among analyses based on limited numbers of …
show promise for resolving incongruences among analyses based on limited numbers of …