Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica

C Schwartz, JF Cheng, R Evans, CA Schwartz… - Metabolic …, 2019 - Elsevier
Genome-wide mutational screens are central to understanding the genetic underpinnings of
evolved and engineered phenotypes. The widespread adoption of CRISPR-Cas9 genome …

Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial …

E Vialetto, S Miele, MG Goren, J Yu, Y Yu… - Nucleic Acids …, 2024 - academic.oup.com
CRISPR-Cas systems can be utilized as programmable-spectrum antimicrobials to combat
bacterial infections. However, how CRISPR nucleases perform as antimicrobials across …

ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screens

ER Hutton, CR Vakoc, A Siepel - Genome Biology, 2021 - Springer
High-throughput CRISPR-Cas9 knockout screens are widely used to evaluate gene
essentiality in cancer research. Here we introduce a probabilistic modeling framework …