Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

An Updated Infrageneric Classification of the North American Oaks (Quercus Subgenus Quercus): Review of the Contribution of Phylogenomic Data to Biogeography …

PS Manos, AL Hipp - Forests, 2021 - mdpi.com
The oak flora of North America north of Mexico is both phylogenetically diverse and species-
rich, including 92 species placed in five sections of subgenus Quercus, the oak clade …

A genetic legacy of introgression confounds phylogeny and biogeography in oaks

JD McVay, AL Hipp, PS Manos - Proceedings of the …, 2017 - royalsocietypublishing.org
Oaks (Quercus L.) have long been suspected to hybridize in nature, and widespread genetic
exchange between morphologically defined species is well documented in two-to six …

Strategies to mitigate shifts in red oak (Quercus sect. Lobatae) distribution under a changing climate

J Rauschendorfer, R Rooney, C Külheim - Tree physiology, 2022 - academic.oup.com
Abstract Red oaks (Quercus sect. Lobatae) are a taxonomic group of hardwood trees, which
occur in swamp forests, subtropical chaparral and savannahs from Columbia to Canada …

A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny

KK Pham, AL Hipp, PS Manos, RC Cronn - Genome, 2017 - cdnsciencepub.com
Owing to high rates of introgressive hybridization, the plastid genome is poorly suited to fine-
scale DNA barcoding and phylogenetic studies of the oak genus (Quercus, Fagaceae). At …

Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus …

S Fitz-Gibbon, AL Hipp, KK Pham, PS Manos… - Genome, 2017 - cdnsciencepub.com
The emergence of next generation sequencing has increased by several orders of
magnitude the amount of data available for phylogenetics. Reduced representation …

RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercus sect. Quercus: Fagaceae)

BY Kim, X Wei, S Fitz‐Gibbon, KE Lohmueller… - Molecular …, 2018 - Wiley Online Library
A long‐term debate in evolutionary biology is the extent to which reproductive isolation is a
necessary element of speciation. Hybridizing plants in general are cited as evidence against …

Environment‐dependent introgression from Quercus dentata to a coastal ecotype of Quercus mongolica var. crispula in northern Japan

T Nagamitsu, K Uchiyama, A Izuno, H Shimizu… - New …, 2020 - Wiley Online Library
Introgression from one species in a specific environment to another may facilitate
colonization of the environment by the recipient species. However, such environment …

Phylogeography of a western North American white oak shaped by introgression and post‐Pleistocene climate change

R Kanne, GA Allen - Journal of Biogeography, 2024 - Wiley Online Library
Aim We examined range‐wide genetic variation in a widespread white oak species in
western North America to determine phylogeographic patterns (including possible latitudinal …

Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus)

S Oney-Birol, S Fitz-Gibbon, JM Chen, PF Gugger… - BMC genetics, 2018 - Springer
Background Hybridization and introgression are common phenomena among oak species.
These processes can be beneficial by introducing favorable genetic variants across species …