Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

P Arribas, C Andújar, K Bohmann, JR DeWaard… - …, 2022 - academic.oup.com
Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity,
with diverse projects currently generating massive quantities of community-level data. The …

Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation

TJ Creedy, C Andújar… - Molecular Ecology …, 2022 - Wiley Online Library
Metabarcoding of DNA extracted from community samples of whole organisms (whole
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …

Multiple species delimitation approaches with COI barcodes poorly fit each other and morphospecies – An integrative taxonomy case of Sri Lankan Sericini chafers …

UGSL Ranasinghe, J Eberle, J Thormann… - Ecology and …, 2022 - Wiley Online Library
DNA taxonomy including barcoding and metabarcoding is widely used to explore the
diversity in biodiversity hotspots. In most of these hotspot areas, chafers are represented by …

Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data

C Andújar, TJ Creedy, P Arribas… - Molecular Ecology …, 2021 - Wiley Online Library
Metabarcoding of Metazoa using mitochondrial genes may be confounded by both the
accumulation of PCR and sequencing artefacts and the co‐amplification of nuclear …

Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a …

V Noguerales, E Meramveliotakis… - Molecular …, 2023 - Wiley Online Library
Disentangling the relative role of environmental filtering and spatial processes in driving
metacommunity structure across mountainous regions remains challenging, as the way we …

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

P Arribas, C Andújar, MI Bidartondo… - Molecular …, 2021 - Wiley Online Library
High‐throughput sequencing (HTS) is increasingly being used for the characterization and
monitoring of biodiversity. If applied in a structured way, across broad geographical scales, it …

Comparison of traditional and DNA metabarcoding samples for monitoring tropical soil arthropods (Formicidae, Collembola and Isoptera)

Y Basset, M Hajibabaei, MTG Wright, AM Castillo… - Scientific Reports, 2022 - nature.com
The soil fauna of the tropics remains one of the least known components of the biosphere.
Long-term monitoring of this fauna is hampered by the lack of taxonomic expertise and …

Joint analysis of species and genetic variation to quantify the role of dispersal and environmental constraints in community turnover

A Baselga, C Gómez‐Rodríguez, MB Araújo… - …, 2022 - Wiley Online Library
Spatial turnover of biological communities is determined by both dispersal and
environmental constraints. However, we lack quantitative predictions about how these …

[PDF][PDF]  Abundance estimation with DNA metabarcoding–recent advancements for terrestrial arthropods

W Sickel, V Zizka, A Scherges… - Metabarcoding and …, 2023 - mbmg.pensoft.net
Biodiversity is declining at alarming rates worldwide and large-scale monitoring is urgently
needed to understand changes and their drivers. While classical taxonomic identification of …

Hidden island endemic species and their implications for cryptic speciation within soil arthropods

AJ Pérez‐Delgado, P Arribas… - Journal of …, 2022 - Wiley Online Library
Aim Specialisation to the soil environment is expected to constrain the spatial scale of
diversification within animal lineages. In this context, flightless arthropod lineages, adapted …