Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

N Rifai, MA Gillette, SA Carr - Nature biotechnology, 2006 - nature.com
Better biomarkers are urgently needed to improve diagnosis, guide molecularly targeted
therapy and monitor activity and therapeutic response across a wide spectrum of disease …

Proteomics by mass spectrometry: approaches, advances, and applications

JR Yates, CI Ruse… - Annual review of …, 2009 - annualreviews.org
Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale
proteomics. In this review, we dissect the overall framework of the MS experiment into its key …

Hydrophilic interaction chromatography

P Hemström, K Irgum - Journal of separation science, 2006 - Wiley Online Library
Separation of polar compounds on polar stationary phases with partly aqueous eluents is by
no means a new separation mode in LC. The first HPLC applications were published more …

Orthogonality of separation in two-dimensional liquid chromatography

M Gilar, P Olivova, AE Daly, JC Gebler - Analytical chemistry, 2005 - ACS Publications
Two-dimensional liquid chromatography is often used to reduce the proteomic sample
complexity prior to tandem mass spectrometry analysis. The 2D-LC performance depends …

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

T Farrah, EW Deutsch, GS Omenn, DS Campbell… - Molecular & cellular …, 2011 - ASBMB
Human blood plasma can be obtained relatively noninvasively and contains proteins from
most, if not all, tissues of the body. Therefore, an extensive, quantitative catalog of plasma …

Human body fluid proteome analysis

S Hu, JA Loo, DT Wong - Proteomics, 2006 - Wiley Online Library
The focus of this article is to review the recent advances in proteome analysis of human
body fluids, including plasma/serum, urine, cerebrospinal fluid, saliva, bronchoalveolar …

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

H Keshishian, T Addona, M Burgess, E Kuhn… - Molecular & Cellular …, 2007 - ASBMB
Biomarker discovery produces lists of candidate markers whose presence and level must be
subsequently verified in serum or plasma. Verification represents a paradigm shift from …

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core …

GS Omenn, DJ States, M Adamski, TW Blackwell… - …, 2005 - Wiley Online Library
HUPO initiated the Plasma Proteome Project (PPP) in 2002. Its pilot phase has (1) evaluated
advantages and limitations of many depletion, fractionation, and MS technology …

Interactions of nanoparticles with plasma proteins: implication on clearance and toxicity of drug delivery systems

PP Karmali, D Simberg - Expert opinion on drug delivery, 2011 - Taylor & Francis
Introduction: Intravenously injected nanoparticles, like any other foreign pathogen that
enters the body, encounter multiple lines of defense intended to neutralize and eliminate the …