In vivo hypermutation and continuous evolution

RS Molina, G Rix, AA Mengiste, B Álvarez… - Nature Reviews …, 2022 - nature.com
Directed evolution has revolutionized biomolecular engineering by applying cycles of
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …

Fluorescent amino acids as versatile building blocks for chemical biology

Z Cheng, E Kuru, A Sachdeva, M Vendrell - Nature Reviews Chemistry, 2020 - nature.com
Fluorophores have transformed the way we study biological systems, enabling non-invasive
studies in cells and intact organisms, which increase our understanding of complex …

A combinatorially complete epistatic fitness landscape in an enzyme active site

KE Johnston, PJ Almhjell, EJ Watkins-Dulaney… - Proceedings of the …, 2024 - pnas.org
Protein engineering often targets binding pockets or active sites which are enriched in
epistasis—nonadditive interactions between amino acid substitutions—and where the …

Directed evolution of enzymatic silicon-carbon bond cleavage in siloxanes

NS Sarai, TJ Fulton, RL O'Meara, KE Johnston… - Science, 2024 - science.org
Volatile methylsiloxanes (VMS) are man-made, nonbiodegradable chemicals produced at a
megaton-per-year scale, which leads to concern over their potential for environmental …

Recent advances in the biosynthesis strategies of nitrogen heterocyclic natural products

B Gao, B Yang, X Feng, C Li - Natural Product Reports, 2022 - pubs.rsc.org
Covering: 2015 to 2020 Nitrogen heterocyclic natural products (NHNPs) are primary or
secondary metabolites containing nitrogen heterocyclic (N-heterocyclic) skeletons. Due to …

Engineering enzymes for noncanonical amino acid synthesis

PJ Almhjell, CE Boville, FH Arnold - Chemical Society Reviews, 2018 - pubs.rsc.org
The standard proteinogenic amino acids grant access to a myriad of chemistries that
harmonize to create life. Outside of these twenty canonical protein building blocks are …

Scalable continuous evolution for the generation of diverse enzyme variants encompassing promiscuous activities

G Rix, EJ Watkins-Dulaney, PJ Almhjell… - Nature …, 2020 - nature.com
Enzyme orthologs sharing identical primary functions can have different promiscuous
activities. While it is possible to mine this natural diversity to obtain useful biocatalysts …

Broadening the scope of biocatalytic C–C bond formation

LE Zetzsche, ARH Narayan - Nature Reviews Chemistry, 2020 - nature.com
Enzymes exercise impeccable control over chemoselectivity, site selectivity and
stereoselectivity in reactions they mediate, such that we have witnessed a surge in the …

Chemistry takes a bath: reactions in aqueous media

DK Romney, FH Arnold, BH Lipshutz… - The Journal of organic …, 2018 - ACS Publications
Chemical reactions in water underpin the very existence of life. But to synthetic chemists,
water is usually considered an enemy, lurking in the shadows, waiting to reduce yields and …

Tryptophan synthase: biocatalyst extraordinaire

E Watkins‐Dulaney, S Straathof, F Arnold - ChemBioChem, 2021 - Wiley Online Library
Tryptophan synthase (TrpS) has emerged as a paragon of noncanonical amino acid (ncAA)
synthesis and is an ideal biocatalyst for synthetic and biological applications. TrpS catalyzes …