Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
X Yu, Z Liu, X Sun - Plant communications, 2023 - cell.com
Plants contain a large number of cell types and exhibit complex regulatory mechanisms.
Studies at the single-cell level have gradually become more common in plant science …
Studies at the single-cell level have gradually become more common in plant science …
Introducing single cell stereo-sequencing technology to transform the plant transcriptome landscape
G Bawa, Z Liu, X Yu, LSP Tran, X Sun - Trends in Plant Science, 2024 - cell.com
Single cell RNA-sequencing (scRNA-seq) advancements have helped detect transcriptional
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
An in situ sequencing approach maps PLASTOCHRON1 at the boundary between indeterminate and determinate cells
R Laureyns, J Joossens, D Herwegh… - Plant …, 2022 - academic.oup.com
The plant shoot apex houses the shoot apical meristem, a highly organized and active stem-
cell tissue where molecular signaling in discrete cells determines when and where leaves …
cell tissue where molecular signaling in discrete cells determines when and where leaves …
Spatial transcriptomics of a lycophyte root sheds light on root evolution
X Yang, W Poelmans, C Grones, A Lakehal… - Current Biology, 2023 - cell.com
Plant roots originated independently in lycophytes and euphyllophytes, whereas early
vascular plants were rootless. The organization of the root apical meristem in …
vascular plants were rootless. The organization of the root apical meristem in …
The transcriptome landscape of developing barley seeds
Cereal grains are an important source of food and feed. To provide comprehensive
spatiotemporal information about biological processes in developing seeds of cultivated …
spatiotemporal information about biological processes in developing seeds of cultivated …
Opportunities and Challenges in Advancing Plant Research with Single-cell Omics
Plants possess diverse cell types and intricate regulatory mechanisms to adapt to the ever-
changing environment of nature. Various strategies have been employed to study cell types …
changing environment of nature. Various strategies have been employed to study cell types …
Leaf starch degradation by β-amylase ZmBAM8 influences drought tolerance in maize
L Niu, X Wu, H Liu, X Hu, W Wang - Carbohydrate Polymers, 2024 - Elsevier
As a typical C 4 plant and important crop worldwide, maize is susceptible to drought. In
maize, transitory starch (TS) turnover occurs in the vascular bundle sheath of leaves …
maize, transitory starch (TS) turnover occurs in the vascular bundle sheath of leaves …
The transcriptome landscape of developing barley seeds reveals H3K27me3 dynamics in endosperm tissues
M Kovacik, A Nowicka, J Zwyrtková, B Strejčková… - bioRxiv, 2023 - biorxiv.org
Cereal grains are an important food and feed. To provide comprehensive spatiotemporal
information about biological processes in developing seeds of cultivated barley, we …
information about biological processes in developing seeds of cultivated barley, we …
Fluorescence hybridization chain reaction enables localization of multiple molecular classes combined with plant cell ultrastructure
Background Recent developments in hybridization chain reaction (HCR) have enabled
robust simultaneous localization of multiple mRNA transcripts using fluorescence in situ …
robust simultaneous localization of multiple mRNA transcripts using fluorescence in situ …