Plant genome sequencing—applications for crop improvement

ME Bolger, B Weisshaar, U Scholz, N Stein… - Current opinion in …, 2014 - Elsevier
Highlights•We discuss major crop genome sequences.•We show ways to cope with complex
grass genomes.•NGS has a major impact on genome sequencing.•A single crop genome …

[HTML][HTML] DNA fingerprinting in botany: past, present, future

H Nybom, K Weising, B Rotter - Investigative genetics, 2014 - Springer
Almost three decades ago Alec Jeffreys published his seminal Nature papers on the use of
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …

[HTML][HTML] Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …

[HTML][HTML] Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs

V Laucou, A Launay, R Bacilieri, T Lacombe… - PloS one, 2018 - journals.plos.org
Grapevine is a very important crop species that is mainly cultivated worldwide for fruits, wine
and juice. Identification of the genetic bases of performance traits through association …

[HTML][HTML] Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties

N Singh, DR Choudhury, AK Singh, S Kumar… - PloS one, 2013 - journals.plos.org
Simple sequence repeat (SSR) and Single Nucleotide Polymorphic (SNP), the two most
robust markers for identifying rice varieties were compared for assessment of genetic …

Large-scale parentage analysis in an extended set of grapevine cultivars (Vitis vinifera L.)

T Lacombe, JM Boursiquot, V Laucou… - Theoretical and Applied …, 2013 - Springer
Inheritance of nuclear microsatellite markers (nSSR) has been proved to be a powerful tool
to verify or uncover the parentage of grapevine cultivars. The aim of the present study was to …

Quantitative trait loci affecting pathogen resistance and ripening of grapevines

E Zyprian, I Ochßner, F Schwander, S Šimon… - Molecular Genetics and …, 2016 - Springer
Grapevines (Vitis vinifera L.) form the basis of viticulture, and are susceptible to diseases
such as downy mildew (Plasmopara viticola) and powdery mildew (Erysiphe necator) …

The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11

C Royo, R Torres-Pérez, N Mauri, N Diestro… - Plant …, 2018 - academic.oup.com
Seedlessness is greatly prized by consumers of fresh grapes. While stenospermocarpic
seed abortion determined by the SEED DEVELOPMENT INHIBITOR (SDI) locus is the usual …

[HTML][HTML] GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by …

ATO Melo, R Bartaula, I Hale - BMC bioinformatics, 2016 - Springer
Background With its simple library preparation and robust approach to genome reduction,
genotyping-by-sequencing (GBS) is a flexible and cost-effective strategy for SNP discovery …

[HTML][HTML] Forensic genetics and genomics: Much more than just a human affair

M Arenas, F Pereira, M Oliveira, N Pinto… - PLoS …, 2017 - journals.plos.org
While traditional forensic genetics has been oriented towards using human DNA in criminal
investigation and civil court cases, it currently presents a much wider application range …