Plant genome sequencing—applications for crop improvement
Highlights•We discuss major crop genome sequences.•We show ways to cope with complex
grass genomes.•NGS has a major impact on genome sequencing.•A single crop genome …
grass genomes.•NGS has a major impact on genome sequencing.•A single crop genome …
[HTML][HTML] DNA fingerprinting in botany: past, present, future
H Nybom, K Weising, B Rotter - Investigative genetics, 2014 - Springer
Almost three decades ago Alec Jeffreys published his seminal Nature papers on the use of
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …
[HTML][HTML] Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …
[HTML][HTML] Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs
V Laucou, A Launay, R Bacilieri, T Lacombe… - PloS one, 2018 - journals.plos.org
Grapevine is a very important crop species that is mainly cultivated worldwide for fruits, wine
and juice. Identification of the genetic bases of performance traits through association …
and juice. Identification of the genetic bases of performance traits through association …
[HTML][HTML] Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties
Simple sequence repeat (SSR) and Single Nucleotide Polymorphic (SNP), the two most
robust markers for identifying rice varieties were compared for assessment of genetic …
robust markers for identifying rice varieties were compared for assessment of genetic …
Large-scale parentage analysis in an extended set of grapevine cultivars (Vitis vinifera L.)
T Lacombe, JM Boursiquot, V Laucou… - Theoretical and Applied …, 2013 - Springer
Inheritance of nuclear microsatellite markers (nSSR) has been proved to be a powerful tool
to verify or uncover the parentage of grapevine cultivars. The aim of the present study was to …
to verify or uncover the parentage of grapevine cultivars. The aim of the present study was to …
Quantitative trait loci affecting pathogen resistance and ripening of grapevines
E Zyprian, I Ochßner, F Schwander, S Šimon… - Molecular Genetics and …, 2016 - Springer
Grapevines (Vitis vinifera L.) form the basis of viticulture, and are susceptible to diseases
such as downy mildew (Plasmopara viticola) and powdery mildew (Erysiphe necator) …
such as downy mildew (Plasmopara viticola) and powdery mildew (Erysiphe necator) …
The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11
Seedlessness is greatly prized by consumers of fresh grapes. While stenospermocarpic
seed abortion determined by the SEED DEVELOPMENT INHIBITOR (SDI) locus is the usual …
seed abortion determined by the SEED DEVELOPMENT INHIBITOR (SDI) locus is the usual …
[HTML][HTML] GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by …
Background With its simple library preparation and robust approach to genome reduction,
genotyping-by-sequencing (GBS) is a flexible and cost-effective strategy for SNP discovery …
genotyping-by-sequencing (GBS) is a flexible and cost-effective strategy for SNP discovery …
[HTML][HTML] Forensic genetics and genomics: Much more than just a human affair
While traditional forensic genetics has been oriented towards using human DNA in criminal
investigation and civil court cases, it currently presents a much wider application range …
investigation and civil court cases, it currently presents a much wider application range …