Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by nextgeneration sequencing and longread sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Green giant—a tiny chloroplast genome with mighty power to produce highvalue proteins: history and phylogeny

H Daniell, S Jin, XG Zhu… - Plant biotechnology …, 2021 - Wiley Online Library
Freeliving cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …

An updated tribal classification of Lamiaceae based on plastome phylogenomics

F Zhao, YP Chen, Y Salmaki, BT Drew, TC Wilson… - BMC biology, 2021 - Springer
Background A robust molecular phylogeny is fundamental for developing a stable
classification and providing a solid framework to understand patterns of diversification …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

[HTML][HTML] Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)

JJ Ringelberg, EJM Koenen, JR Iganci, LP de Queiroz… - PhytoKeys, 2022 - ncbi.nlm.nih.gov
Abstract Subfamily Caesalpinioideae with ca. 4,600 species in 152 genera is the second-
largest subfamily of legumes (Leguminosae) and forms an ecologically and economically …

Defining coalescent genes: theory meets practice in organelle phylogenomics

JJ Doyle - Systematic biology, 2022 - academic.oup.com
The species tree paradigm that dominates current molecular systematic practice infers
species trees from collections of sequences under assumptions of the multispecies …

A plastid phylogenomic framework for the palm family (Arecaceae)

G Yao, YQ Zhang, C Barrett, B Xue, S Bellot, WJ Baker… - BMC biology, 2023 - Springer
Background Over the past decade, phylogenomics has greatly advanced our knowledge of
angiosperm evolution. However, phylogenomic studies of large angiosperm families with …

Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family

W Dong, E Li, Y Liu, C Xu, Y Wang, K Liu, X Cui, J Sun… - BMC biology, 2022 - Springer
Background Deep-branching phylogenetic relationships are often difficult to resolve
because phylogenetic signals are obscured by the long history and complexity of …

Highly resolved papilionoid legume phylogeny based on plastid phylogenomics

IS Choi, D Cardoso, LP De Queiroz… - Frontiers in Plant …, 2022 - frontiersin.org
Comprising 501 genera and around 14,000 species, Papilionoideae is not only the largest
subfamily of Fabaceae (Leguminosae; legumes), but also one of the most extraordinarily …

Chromosome-level genome assembly and population genomics of Robinia pseudoacacia reveal the genetic basis for its wide cultivation

Z Wang, X Zhang, W Lei, H Zhu, S Wu, B Liu… - Communications …, 2023 - nature.com
Urban greening provides important ecosystem services and ideal places for urban
recreation and is a serious consideration for municipal decision-makers. Among the tree …