[HTML][HTML] Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

F Wemheuer, JA Taylor, R Daniel, E Johnston… - Environmental …, 2020 - Springer
Abstract Background Sequencing of 16S rRNA genes has become a powerful technique to
study microbial communities and their responses towards changing environmental …

[HTML][HTML] Tree species shape soil bacterial community structure and function in temperate deciduous forests

A Dukunde, D Schneider, M Schmidt… - Frontiers in …, 2019 - frontiersin.org
Amplicon-based analysis of 16S rRNA genes and transcripts was used to assess the effect
of tree species composition on soil bacterial community structure and function in a temperate …

[HTML][HTML] How rainforest conversion to agricultural systems in Sumatra (Indonesia) affects active soil bacterial communities

D Berkelmann, D Schneider, M Engelhaupt… - Frontiers in …, 2018 - frontiersin.org
Palm oil production in Indonesia increased constantly over the last decades, which led to
massive deforestation, especially on Sumatra island. The ongoing conversion of rainforest to …

[HTML][HTML] Prokaryotic diversity and community patterns in Antarctic continental shelf sponges

G Steinert, B Wemheuer, D Janussen… - Frontiers in Marine …, 2019 - frontiersin.org
Marine sponges (Phylum Porifera) are globally distributed within marine and freshwater
ecosystems. In addition, sponges host dense and diverse prokaryotic communities, which …

Differential priority effects impact taxonomy and functionality of host‐associated microbiomes

J Nappi, P Goncalves, T Khan, ME Majzoub… - Molecular …, 2023 - Wiley Online Library
Most multicellular eukaryotes host complex communities of microorganisms, but the factors
that govern their assembly are poorly understood. The settlement of specific microorganisms …

Ulva lactuca as a functional ingredient and water bioremediator positively influences the hepatopancreas and water microbiota in the rearing of Litopenaeus …

A Mangott, J Nappi, ADP Carini, P Goncalves, K Hua… - Algal Research, 2020 - Elsevier
Integrated multi-trophic aquaculture (IMTA) is increasingly recognized as a means to
improve the sustainability of aquaculture and to mitigate its environmental impact …

[HTML][HTML] Molecular Ecology and Genetic Diversity of the Roseobacter Clade

R Daniel, M Simon, B Wemheuer - Frontiers in Microbiology, 2018 - frontiersin.org
The Roseobacter clade, more recently referred to as Roseobacter group, is a paraphyletic
group within the Rhodobacteraceae (Alphaproteobacteria)(Simon et al., 2017). It is one of …

[HTML][HTML] Legacy metal contaminants and excess nutrients in low flow estuarine embayments alter composition and function of benthic bacterial communities

SC Birrer, F Wemheuer, KA Dafforn… - Frontiers in …, 2021 - frontiersin.org
Coastal systems such as estuaries are threatened by multiple anthropogenic stressors
worldwide. However, how these stressors and estuarine hydrology shape benthic bacterial …

Shared and contrasting associations in the dynamic nano‐and picoplankton communities of two close but contrasting sites from the Bay of Biscay

L Garate, L Alonso‐Sáez, M Revilla… - Environmental …, 2022 - Wiley Online Library
Pico‐and nanoplankton are key players in the marine ecosystems due to their implication in
the biogeochemical cycles, nutrient recycling and the pelagic food webs. However, the …

[HTML][HTML] Manipulating the Ulva holobiont: Co-culturing Ulva ohnoi with Phaeobacter bacteria as a strategy for disease control in fish-macroalgae IMTA-RAS …

J Pintado, G Del Olmo, T Guinebert, P Ruiz… - Journal of Applied …, 2023 - Springer
The green alga Ulva ohnoi M. Hiraoka & S. Shimada is an effective biofiltration agent of fish
effluents in Integrated Multi-Trophic Aquaculture Recirculation Systems (IMTA-RAS), due to …