Ethidium bromide interactions with DNA: an exploration of a classic DNA–ligand complex with unbiased molecular dynamics simulations
R Galindo-Murillo, TE Cheatham III - Nucleic acids research, 2021 - academic.oup.com
Visualization of double stranded DNA in gels with the binding of the fluorescent dye
ethidium bromide has been a basic experimental technique in any molecular biology …
ethidium bromide has been a basic experimental technique in any molecular biology …
Molecular recognition of synthetic RNAs by phenothiazinium dyes methylene blue and new methylene blue: Thermodynamic approach
P Paul - Journal of Molecular Structure, 2024 - Elsevier
Many biological process and function centers around recognition of double stranded RNA
as it impacts numerous pathways associated with maturation of cellular RNA. This work …
as it impacts numerous pathways associated with maturation of cellular RNA. This work …
Modeling and analysis of intercalant effects on circular DNA conformation
E Krueger, J Shim, A Fathizadeh, AN Chang, B Subei… - ACS …, 2016 - ACS Publications
The large-scale conformation of DNA molecules plays a critical role in many basic elements
of cellular functionality and viability. By targeting the structural properties of DNA, many …
of cellular functionality and viability. By targeting the structural properties of DNA, many …
The theory of interceptor-protector action of DNA binding drugs
MP Evstigneev, AS Buchelnikov… - Progress in Biophysics and …, 2019 - Elsevier
The review discusses the theory of interceptor-protector action (the IPA theory) as the new
self-consistent biophysical theory establishing a quantitative interrelation between …
self-consistent biophysical theory establishing a quantitative interrelation between …
[HTML][HTML] Thermal analysis of ligand-DNA interaction: determination of binding parameters
E Bereznyak, N Gladkovskaya, E Dukhopelnykov… - Aims …, 2015 - aimspress.com
The review discusses the methods of thermodynamic analysis of reactions of non-covalent
binding of biologically active compounds with DNA, which is a key constituent of cell …
binding of biologically active compounds with DNA, which is a key constituent of cell …
Investigations on the interactions of 5-fluorouracil with herring sperm DNA: Steady state/time resolved and molecular modeling studies
S Chinnathambi, S Karthikeyan… - … Reviews and Letters, 2015 - World Scientific
In the present study, the interaction of 5-Fluorouracil with herring sperm DNA is reported
using spectroscopic and molecular modeling techniques. This binding study of 5-FU with hs …
using spectroscopic and molecular modeling techniques. This binding study of 5-FU with hs …
Ligand binding to nucleic acids in solution and on microchips
YD Nechipurenko, AS Buchelnikov - Biophysics, 2022 - Springer
The equilibrium binding of ligands (proteins, biologically active compounds, and
oligonucleotides) to nucleic acids underlies many processes in the living cell. Model study …
oligonucleotides) to nucleic acids underlies many processes in the living cell. Model study …
Investigation of differential absorption of DNA complexes with ligands
MV Minasyants - Proceedings of the YSU B: Chemical and …, 2014 - journals.ysu.am
The investigation of complexes of ethidium bromide (EtBr) and methylene blue (MB) with
DNA at 0.02 M Na+ ionic strength of solution has been carried out. Absorption and …
DNA at 0.02 M Na+ ionic strength of solution has been carried out. Absorption and …
Effects of Intercalating Molecules on the Polymer Properties of DNA
Atomic force microscopy (AFM) enables determination of physical properties from single
DNA molecules. Insertion of aromatic molecules into the structure of DNA results in …
DNA molecules. Insertion of aromatic molecules into the structure of DNA results in …
Thermodynamic analysis of ligand-DNA complex formation from the spectrophotometric data
H Anastasiia - 2015 International Young Scientists Forum on …, 2015 - ieeexplore.ieee.org
DNA is the target for many anticancer and antitumor drugs. Therefore determination of the
thermodynamic parameters of ligands-DNA interaction for prediction of biological activity at …
thermodynamic parameters of ligands-DNA interaction for prediction of biological activity at …