The emerging use of zebrafish to model metabolic disease

A Seth, DL Stemple, I Barroso - Disease models & …, 2013 - journals.biologists.com
The zebrafish research community is celebrating! The zebrafish genome has recently been
sequenced, the Zebrafish Mutation Project (launched by the Wellcome Trust Sanger …

The core promoter: At the heart of gene expression

YM Danino, D Even, D Ideses… - Biochimica et Biophysica …, 2015 - Elsevier
The identities of different cells and tissues in multicellular organisms are determined by
tightly controlled transcriptional programs that enable accurate gene expression. The …

An atlas of active enhancers across human cell types and tissues

R Andersson, C Gebhard, I Miguel-Escalada, I Hoof… - Nature, 2014 - nature.com
Enhancers control the correct temporal and cell-type-specific activation of gene expression
in multicellular eukaryotes. Knowing their properties, regulatory activity and targets is crucial …

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

T Jores, J Tonnies, T Wrightsman, ES Buckler… - Nature Plants, 2021 - nature.com
Targeted engineering of plant gene expression holds great promise for ensuring food
security and for producing biopharmaceuticals in plants. However, this engineering requires …

A high-resolution mRNA expression time course of embryonic development in zebrafish

RJ White, JE Collins, IM Sealy, N Wali, CM Dooley… - elife, 2017 - elifesciences.org
We have produced an mRNA expression time course of zebrafish development across 18
time points from 1 cell to 5 days post-fertilisation sampling individual and pools of embryos …

[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
Zebrafish, a popular organism for studying embryonic development and for modeling human
diseases, has so far lacked a systematic functional annotation program akin to those in other …

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

R Tomer, K Khairy, F Amat, PJ Keller - Nature methods, 2012 - nature.com
Live imaging of large biological specimens is fundamentally limited by the short optical
penetration depth of light microscopes. To maximize physical coverage, we developed the …

Systematic analysis of intrinsic enhancer-promoter compatibility in the mouse genome

M Martinez-Ara, F Comoglio, J van Arensbergen… - Molecular cell, 2022 - cell.com
Gene expression is in part controlled by cis-regulatory elements (CREs) such as enhancers
and repressive elements. Anecdotal evidence has indicated that a CRE and a promoter …

Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae

C Chen, Y Gu, J Philippe, P Zhang, H Bachman… - Nature …, 2021 - nature.com
Modern biomedical research and preclinical pharmaceutical development rely heavily on
the phenotyping of small vertebrate models for various diseases prior to human testing. In …

High-throughput in vivo vertebrate screening

C Pardo-Martin, TY Chang, BK Koo, CL Gilleland… - Nature …, 2010 - nature.com
We demonstrate a high-throughput platform for cellular-resolution in vivo chemical and
genetic screens on zebrafish larvae. The system automatically loads zebrafish from …