Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
Abstract Background The international Dog10K project aims to sequence and analyze
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …
Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation
Genotype imputation is a process that estimates missing genotypes in terms of the
haplotypes and genotypes in a reference panel. It can effectively increase the density of …
haplotypes and genotypes in a reference panel. It can effectively increase the density of …
SNP‐based heritability and genetic architecture of cranial cruciate ligament rupture in Labrador Retrievers
Cranial cruciate ligament rupture (CCLR) is one of the leading causes of pelvic limb
lameness in dogs. About 6% of Labrador Retrievers suffer from this orthopedic problem. The …
lameness in dogs. About 6% of Labrador Retrievers suffer from this orthopedic problem. The …
Improving the resolution of canine genome‐wide association studies using genotype imputation: A study of two breeds
CA Jenkins… - Animal …, 2021 - Wiley Online Library
Genotype imputation using a reference panel that combines high‐density array data and
publicly available whole genome sequence consortium variant data is potentially a cost …
publicly available whole genome sequence consortium variant data is potentially a cost …
A Pipeline for Phasing and Genotype Imputation on Mixed Human Data (Parents-Offspring Trios and Unrelated Subjects) by Reviewing Current Methods and Software
Genotype imputation has become an essential prerequisite when performing association
analysis. It is a computational technique that allows us to infer genetic markers that have not …
analysis. It is a computational technique that allows us to infer genetic markers that have not …
Assessing accuracy of genotype imputation in the afrikaner and brahman cattle breeds of South Africa
S Mdyogolo, MD MacNeil, FWC Neser… - Tropical Animal Health …, 2022 - Springer
Imputation may be used to rescue genomic data from animals that would otherwise be
eliminated due to a lower than desired call rate. The aim of this study was to compare the …
eliminated due to a lower than desired call rate. The aim of this study was to compare the …
Genetic Investigations of Canine Idiopathic Epilepsy and Movement Disorders
CA Jenkins - 2023 - search.proquest.com
Dogs represent a fascinating species with dramatic variation in traits across hundreds of
breeds. Genetic bottlenecks, inbreeding, and selection for extreme phenotypes have led to …
breeds. Genetic bottlenecks, inbreeding, and selection for extreme phenotypes have led to …
The importance of disease incidence rate on performance of GBLUP, threshold BayesA and machine learning methods in original and imputed data set
Y Naderi, S Sadeghi - Spanish Journal of Agricultural Research, 2020 - sjar.revistas.csic.es
Aim of study: To predict genomic accuracy of binary traits considering different rates of
disease incidence. Area of study: Simulation Material and methods: Two machine learning …
disease incidence. Area of study: Simulation Material and methods: Two machine learning …
Siccuracy: An R-package for executing genotype imputation strategy simulations with AlphaImpute
SMK Edwards - bioRxiv, 2017 - biorxiv.org
Background The reported R-package provides an easy way for executing and evaluating
genotype imputation studies, by providing functions for preparing input files for AlphaImpute …
genotype imputation studies, by providing functions for preparing input files for AlphaImpute …