Bacterial metabolism and antibiotic efficacy

JM Stokes, AJ Lopatkin, MA Lobritz, JJ Collins - Cell metabolism, 2019 - cell.com
Antibiotics target energy-consuming processes. As such, perturbations to bacterial metabolic
homeostasis are significant consequences of treatment. Here, we describe three postulates …

[HTML][HTML] Unraveling antimicrobial resistance using metabolomics

M Kok, L Maton, M van der Peet, T Hankemeier… - Drug Discovery …, 2022 - Elsevier
The emergence of antimicrobial resistance (AMR) in bacterial pathogens represents a
global health threat. The metabolic state of bacteria is associated with a range of genetic …

A white-box machine learning approach for revealing antibiotic mechanisms of action

JH Yang, SN Wright, M Hamblin, D McCloskey… - Cell, 2019 - cell.com
Current machine learning techniques enable robust association of biological signals with
measured phenotypes, but these approaches are incapable of identifying causal …

Bactericidal antibiotics induce toxic metabolic perturbations that lead to cellular damage

P Belenky, DY Jonathan, CBM Porter, NR Cohen… - Cell reports, 2015 - cell.com
Understanding how antibiotics impact bacterial metabolism may provide insight into their
mechanisms of action and could lead to enhanced therapeutic methodologies. Here, we …

Microbial metabolomics: From novel technologies to diversified applications

D Ye, X Li, J Shen, X Xia - TrAC Trends in Analytical Chemistry, 2022 - Elsevier
Microbial metabolomics focuses on the analysis of intracellular or extracellular primary
metabolites, signaling molecules, hormones, and secondary metabolites, and it is an …

Mitochondria need their sleep: redox, bioenergetics, and temperature regulation of circadian rhythms and the role of cysteine-mediated redox signaling, uncoupling …

RB Richardson, RJ Mailloux - Antioxidants, 2023 - mdpi.com
Highlights What are the main findings? Hypothesis: Redox, bioenergetic and temperature
regulation is critical in maintaining cellular circadian rhythms; wakefulness is mainly …

Inhibition of stationary phase respiration impairs persister formation in E. coli

MA Orman, MP Brynildsen - Nature communications, 2015 - nature.com
Bacterial persisters are rare phenotypic variants that temporarily tolerate high antibiotic
concentrations. Persisters have been hypothesized to underlie the recalcitrance of biofilm …

Multi-omics quantification of species variation of Escherichia coli links molecular features with strain phenotypes

JM Monk, A Koza, MA Campodonico, D Machado… - Cell systems, 2016 - cell.com
Escherichia coli strains are widely used in academic research and biotechnology. New
technologies for quantifying strain-specific differences and their underlying contributing …

Superoxide dismutase activity confers (p)ppGpp-mediated antibiotic tolerance to stationary-phase Pseudomonas aeruginosa

D Martins, G McKay, G Sampathkumar… - Proceedings of the …, 2018 - National Acad Sciences
Metabolically quiescent bacteria represent a large proportion of those in natural and host
environments, and they are often refractory to antibiotic treatment. Such drug tolerance is …

Engineering strategies to boost crop productivity by cutting respiratory carbon loss

JS Amthor, A Bar-Even, AD Hanson, AH Millar… - The Plant …, 2019 - academic.oup.com
Roughly half the carbon that crop plants fix by photosynthesis is subsequently lost by
respiration. Nonessential respiratory activity leading to unnecessary CO2 release is unlikely …