Nanopore-based technologies beyond DNA sequencing
Inspired by the biological processes of molecular recognition and transportation across
membranes, nanopore techniques have evolved in recent decades as ultrasensitive …
membranes, nanopore techniques have evolved in recent decades as ultrasensitive …
Biological nanopore approach for single‐molecule protein sequencing
Proteins are responsible for the occurrence and treatment of many diseases, and therefore
protein sequencing will revolutionize proteomics and clinical diagnostics. Biological …
protein sequencing will revolutionize proteomics and clinical diagnostics. Biological …
Martini 3: a general purpose force field for coarse-grained molecular dynamics
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
Peptide sequencing based on host–guest interaction-assisted nanopore sensing
Y Zhang, Y Yi, Z Li, K Zhou, L Liu, HC Wu - Nature methods, 2024 - nature.com
Direct protein sequencing technologies with improved sensitivity and throughput are still
needed. Here, we propose an alternative method for peptide sequencing based on …
needed. Here, we propose an alternative method for peptide sequencing based on …
Translocation of linearized full-length proteins through an engineered nanopore under opposing electrophoretic force
A Sauciuc, B Morozzo della Rocca, MJ Tadema… - Nature …, 2024 - nature.com
Nanopores have recently been used to identify and fingerprint proteins. However, because
proteins, unlike DNA, do not have a uniform charge, the electrophoretic force cannot in …
proteins, unlike DNA, do not have a uniform charge, the electrophoretic force cannot in …
Detection of phosphorylation post-translational modifications along single peptides with nanopores
Current methods to detect post-translational modifications of proteins, such as phosphate
groups, cannot measure single molecules or differentiate between closely spaced …
groups, cannot measure single molecules or differentiate between closely spaced …
Enzyme-less nanopore detection of post-translational modifications within long polypeptides
P Martin-Baniandres, WH Lan, S Board… - Nature …, 2023 - nature.com
Means to analyse cellular proteins and their millions of variants at the single-molecule level
would uncover substantial information previously unknown to biology. Nanopore …
would uncover substantial information previously unknown to biology. Nanopore …
Nanopore-based protein identification
M Afshar Bakshloo, JJ Kasianowicz… - Journal of the …, 2022 - ACS Publications
The implementation of a reliable, rapid, inexpensive, and simple method for whole-proteome
identification would greatly benefit cell biology research and clinical medicine. Proteins are …
identification would greatly benefit cell biology research and clinical medicine. Proteins are …
Machine learning for functional protein design
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …
structure data have radically transformed computational protein design. New methods …
Single Molecule Ratcheting Motion of Peptides in a Mycobacterium smegmatis Porin A (MspA) Nanopore
S Yan, J Zhang, Y Wang, W Guo, S Zhang, Y Liu… - Nano …, 2021 - ACS Publications
Diverse functions of proteins, including synthesis, catalysis, and signaling, result from their
highly variable amino acid sequences. The technology allowing for direct analysis of protein …
highly variable amino acid sequences. The technology allowing for direct analysis of protein …