The population genetics of pathogenic Escherichia coli

E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential

O Clermont, OVA Dixit, B Vangchhia… - Environmental …, 2019 - Wiley Online Library
The phylogeny of the Escherichia coli species, with the identification of seven phylogroups
(A, B1, B2, C, D, E and F), is linked to the lifestyle of the strains. With the accumulation of …

Fecal indicator bacteria from environmental sources; strategies for identification to improve water quality monitoring

ML Devane, E Moriarty, L Weaver, A Cookson, B Gilpin - Water Research, 2020 - Elsevier
In tropical to temperate environments, fecal indicator bacteria (FIB), such as enterococci and
Escherichia coli, can persist and potentially multiply, far removed from their natural reservoir …

A new clone sweeps clean: the enigmatic emergence of Escherichia coli sequence type 131

R Banerjee, JR Johnson - Antimicrobial agents and …, 2014 - Am Soc Microbiol
Escherichia coli sequence type 131 (ST131) is an extensively antimicrobial-resistant E. coli
clonal group that has spread explosively throughout the world. Recent molecular …

Escherichia coli Bloodstream Infections in Patients at a University Hospital: Virulence Factors and Clinical Characteristics

AP Daga, VL Koga, JGM Soncini… - Frontiers in cellular …, 2019 - frontiersin.org
Extraintestinal pathogenic Escherichia coli (ExPEC) isolates are responsible for many
bloodstream infections. The aim of this study was to characterize E. coli isolated from the …

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

M Galtier, L De Sordi, D Maura… - Environmental …, 2016 - Wiley Online Library
Uropathogenic Escherichia coli (UPEC) is the leading cause of urinary tract infections (UTIs)
worldwide, causing over 150 million clinical cases annually. There is currently no specific …

Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence

G Royer, O Clermont, J Marin, B Condamine… - Nature …, 2023 - nature.com
The intrinsic virulence of extra-intestinal pathogenic Escherichia coli is associated with
numerous chromosomal and/or plasmid-borne genes, encoding diverse functions such as …

Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in …

M Massot, AS Daubié, O Clermont… - …, 2016 - microbiologyresearch.org
It is important to study commensal populations of Escherichia coli because they appear to be
the reservoir of both extra-intestinal pathogenic E. coli and antibiotic resistant strains of E …

Prevalence of Virulence Genes and Their Association with Antimicrobial Resistance Among Pathogenic E. coli Isolated from Egyptian Patients with Different Clinical …

RM Abd El-Baky, RA Ibrahim… - Infection and Drug …, 2020 - Taylor & Francis
Introduction Escherichia (E.) coli can cause intestinal and extra-intestinal infections which
ranged from mild to life-threatening infections. The severity of infection is a product of many …